Hb_004531_080

Information

Type -
Description -
Location Contig4531: 43133-48935
Sequence    

Annotation

kegg
ID rcu:RCOM_1491960
description hypothetical protein
nr
ID XP_002515995.1
description hypothetical protein RCOM_1491960 [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RQH6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1491960 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43296: 44952-45729 , PASA_asmbl_43297: 45739-45900 , PASA_asmbl_43298: 46058-46313 , PASA_asmbl_43299: 47929-48969
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004531_080 0.0 - - hypothetical protein RCOM_1491960 [Ricinus communis]
2 Hb_002871_130 0.1036993599 - - PREDICTED: non-structural maintenance of chromosomes element 4 homolog A isoform X2 [Jatropha curcas]
3 Hb_007943_180 0.1131533443 - - PREDICTED: uncharacterized protein LOC105637734 [Jatropha curcas]
4 Hb_000500_340 0.115242434 - - PREDICTED: exonuclease 1 [Jatropha curcas]
5 Hb_004007_130 0.1169977013 - - PREDICTED: uncharacterized protein LOC105639843 [Jatropha curcas]
6 Hb_001123_310 0.1205515114 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]
7 Hb_000483_080 0.1219707087 - - hypothetical protein CISIN_1g000833mg [Citrus sinensis]
8 Hb_003109_010 0.1277304681 - - PREDICTED: kinesin-like protein KIN12B [Jatropha curcas]
9 Hb_000190_220 0.1283448214 - - PREDICTED: serine/threonine-protein kinase Nek2 [Jatropha curcas]
10 Hb_003228_050 0.1288748434 - - chromomethylase [Hevea brasiliensis]
11 Hb_006970_130 0.1293395009 - - PREDICTED: histone H3.3-like [Colobus angolensis palliatus]
12 Hb_124677_050 0.1343856989 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001524_120 0.1353987018 - - myo-inositol-1 phosphate synthase [Hevea brasiliensis]
14 Hb_093458_020 0.1357454704 desease resistance Gene Name: AAA PREDICTED: chromosome transmission fidelity protein 18 homolog [Jatropha curcas]
15 Hb_002284_260 0.1388751186 - - brca1 interacting protein helicase 1 brip1, putative [Ricinus communis]
16 Hb_000120_300 0.1392904016 - - PREDICTED: kinesin-like calmodulin-binding protein isoform X1 [Eucalyptus grandis]
17 Hb_001401_040 0.1393809222 - - PREDICTED: protein CYPRO4 [Jatropha curcas]
18 Hb_002030_130 0.1394293194 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
19 Hb_000260_380 0.1397300496 - - PREDICTED: cell division control protein 2 homolog C [Jatropha curcas]
20 Hb_001999_160 0.1410975291 - - hypothetical protein JCGZ_08488 [Jatropha curcas]

Gene co-expression network

sample Hb_004531_080 Hb_004531_080 Hb_002871_130 Hb_002871_130 Hb_004531_080--Hb_002871_130 Hb_007943_180 Hb_007943_180 Hb_004531_080--Hb_007943_180 Hb_000500_340 Hb_000500_340 Hb_004531_080--Hb_000500_340 Hb_004007_130 Hb_004007_130 Hb_004531_080--Hb_004007_130 Hb_001123_310 Hb_001123_310 Hb_004531_080--Hb_001123_310 Hb_000483_080 Hb_000483_080 Hb_004531_080--Hb_000483_080 Hb_002871_130--Hb_004007_130 Hb_011861_040 Hb_011861_040 Hb_002871_130--Hb_011861_040 Hb_002284_260 Hb_002284_260 Hb_002871_130--Hb_002284_260 Hb_093458_020 Hb_093458_020 Hb_002871_130--Hb_093458_020 Hb_002871_130--Hb_000483_080 Hb_003020_190 Hb_003020_190 Hb_007943_180--Hb_003020_190 Hb_003095_100 Hb_003095_100 Hb_007943_180--Hb_003095_100 Hb_007943_180--Hb_001123_310 Hb_003109_010 Hb_003109_010 Hb_007943_180--Hb_003109_010 Hb_000120_300 Hb_000120_300 Hb_007943_180--Hb_000120_300 Hb_124677_050 Hb_124677_050 Hb_000500_340--Hb_124677_050 Hb_007632_210 Hb_007632_210 Hb_000500_340--Hb_007632_210 Hb_003228_050 Hb_003228_050 Hb_000500_340--Hb_003228_050 Hb_001584_360 Hb_001584_360 Hb_000500_340--Hb_001584_360 Hb_005183_150 Hb_005183_150 Hb_000500_340--Hb_005183_150 Hb_004007_130--Hb_002284_260 Hb_003360_010 Hb_003360_010 Hb_004007_130--Hb_003360_010 Hb_006970_130 Hb_006970_130 Hb_004007_130--Hb_006970_130 Hb_024682_030 Hb_024682_030 Hb_004007_130--Hb_024682_030 Hb_001123_310--Hb_000120_300 Hb_000207_350 Hb_000207_350 Hb_001123_310--Hb_000207_350 Hb_001123_310--Hb_000483_080 Hb_002965_160 Hb_002965_160 Hb_001123_310--Hb_002965_160 Hb_010381_040 Hb_010381_040 Hb_001123_310--Hb_010381_040 Hb_006133_020 Hb_006133_020 Hb_001123_310--Hb_006133_020 Hb_000483_080--Hb_000120_300 Hb_000077_110 Hb_000077_110 Hb_000483_080--Hb_000077_110 Hb_000483_080--Hb_002284_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0921333 0.107186 2.38248 1.38135 0.0155503 0.0286224
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.127556 0.100371 0.081956 0.569517 0.548258

CAGE analysis