Hb_003095_100

Information

Type -
Description -
Location Contig3095: 62693-62908
Sequence    

Annotation

kegg
ID rcu:RCOM_0938860
description hypothetical protein
nr
ID XP_002519125.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RZF6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0938860 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32702: 62631-63307
cDNA
(Sanger)
(ID:Location)		 012_B04.ab1: 62631-63050 , 039_E21.ab1: 62631-63050

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003095_100 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_007943_180 0.1189046761 - - PREDICTED: uncharacterized protein LOC105637734 [Jatropha curcas]
3 Hb_024973_020 0.1262717087 - - Protein regulator of cytokinesis, putative [Ricinus communis]
4 Hb_001501_070 0.1328660997 - - PREDICTED: condensin complex subunit 2 [Jatropha curcas]
5 Hb_002942_120 0.1476490094 transcription factor TF Family: bHLH Transcription factor ICE1, putative [Ricinus communis]
6 Hb_038044_010 0.1479880154 - - 12-oxophytodienoate reductase 2 [Theobroma cacao]
7 Hb_001536_020 0.1516052019 transcription factor TF Family: GRF PREDICTED: uncharacterized protein LOC105631006 [Jatropha curcas]
8 Hb_001478_020 0.1615036767 desease resistance Gene Name: AAA thyroid hormone receptor interactor, putative [Ricinus communis]
9 Hb_029510_130 0.1617341289 - - PREDICTED: malonate--CoA ligase [Jatropha curcas]
10 Hb_004218_050 0.1621579975 - - annexin [Manihot esculenta]
11 Hb_000042_390 0.1665465176 - - PREDICTED: cyclin-dependent kinase inhibitor 7 [Jatropha curcas]
12 Hb_001761_010 0.1705174206 - - PREDICTED: uncharacterized protein LOC105639282 [Jatropha curcas]
13 Hb_001343_120 0.1719290107 - - conserved hypothetical protein [Ricinus communis]
14 Hb_004846_230 0.1733304683 - - Chaperone protein dnaJ 8, chloroplast precursor, putative [Ricinus communis]
15 Hb_003109_010 0.1733566892 - - PREDICTED: kinesin-like protein KIN12B [Jatropha curcas]
16 Hb_000347_140 0.1740158896 - - PREDICTED: protein FLUORESCENT IN BLUE LIGHT, chloroplastic isoform X2 [Jatropha curcas]
17 Hb_012653_010 0.1747069612 - - PREDICTED: subtilisin-like protease SBT2.5 [Jatropha curcas]
18 Hb_001934_040 0.1769713741 - - PREDICTED: vacuolar iron transporter 1-like [Jatropha curcas]
19 Hb_004531_080 0.178148172 - - hypothetical protein RCOM_1491960 [Ricinus communis]
20 Hb_002871_130 0.1787473275 - - PREDICTED: non-structural maintenance of chromosomes element 4 homolog A isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_003095_100 Hb_003095_100 Hb_007943_180 Hb_007943_180 Hb_003095_100--Hb_007943_180 Hb_024973_020 Hb_024973_020 Hb_003095_100--Hb_024973_020 Hb_001501_070 Hb_001501_070 Hb_003095_100--Hb_001501_070 Hb_002942_120 Hb_002942_120 Hb_003095_100--Hb_002942_120 Hb_038044_010 Hb_038044_010 Hb_003095_100--Hb_038044_010 Hb_001536_020 Hb_001536_020 Hb_003095_100--Hb_001536_020 Hb_004531_080 Hb_004531_080 Hb_007943_180--Hb_004531_080 Hb_003020_190 Hb_003020_190 Hb_007943_180--Hb_003020_190 Hb_001123_310 Hb_001123_310 Hb_007943_180--Hb_001123_310 Hb_003109_010 Hb_003109_010 Hb_007943_180--Hb_003109_010 Hb_000120_300 Hb_000120_300 Hb_007943_180--Hb_000120_300 Hb_012653_010 Hb_012653_010 Hb_024973_020--Hb_012653_010 Hb_024973_020--Hb_038044_010 Hb_004218_050 Hb_004218_050 Hb_024973_020--Hb_004218_050 Hb_024973_020--Hb_001501_070 Hb_008406_100 Hb_008406_100 Hb_024973_020--Hb_008406_100 Hb_001761_010 Hb_001761_010 Hb_024973_020--Hb_001761_010 Hb_001478_020 Hb_001478_020 Hb_001501_070--Hb_001478_020 Hb_001501_070--Hb_038044_010 Hb_010180_030 Hb_010180_030 Hb_001501_070--Hb_010180_030 Hb_000365_210 Hb_000365_210 Hb_001501_070--Hb_000365_210 Hb_029510_130 Hb_029510_130 Hb_001501_070--Hb_029510_130 Hb_002942_120--Hb_004218_050 Hb_004846_230 Hb_004846_230 Hb_002942_120--Hb_004846_230 Hb_002942_120--Hb_038044_010 Hb_005527_060 Hb_005527_060 Hb_002942_120--Hb_005527_060 Hb_021346_050 Hb_021346_050 Hb_002942_120--Hb_021346_050 Hb_002942_120--Hb_007943_180 Hb_038044_010--Hb_029510_130 Hb_007545_110 Hb_007545_110 Hb_038044_010--Hb_007545_110 Hb_038044_010--Hb_001478_020 Hb_000042_390 Hb_000042_390 Hb_001536_020--Hb_000042_390 Hb_001347_030 Hb_001347_030 Hb_001536_020--Hb_001347_030 Hb_000753_170 Hb_000753_170 Hb_001536_020--Hb_000753_170 Hb_010863_030 Hb_010863_030 Hb_001536_020--Hb_010863_030 Hb_001536_020--Hb_012653_010 Hb_173029_030 Hb_173029_030 Hb_001536_020--Hb_173029_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
49.6359 22.7409 437.374 111.838 7.11194 7.45401
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.7396 21.1288 5.79179 59.0579 80.9039

CAGE analysis