Hb_008406_100

Information

Type -
Description -
Location Contig8406: 69002-74337
Sequence    

Annotation

kegg
ID pop:POPTR_0007s01050g
description POPTRDRAFT_763736; hypothetical protein
nr
ID XP_012088243.1
description PREDICTED: protein TPX2 isoform X2 [Jatropha curcas]
swissprot
ID F4I2H7
description Protein TPX2 OS=Arabidopsis thaliana GN=TPX2 PE=1 SV=1
trembl
ID A0A067JJM6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25759 PE=4 SV=1
Gene Ontology
ID GO:0005819
description protein tpx2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60110: 69024-71342 , PASA_asmbl_60111: 71355-74381
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008406_100 0.0 - - PREDICTED: protein TPX2 isoform X2 [Jatropha curcas]
2 Hb_005162_130 0.1085017252 - - PREDICTED: uncharacterized protein LOC105648433 isoform X2 [Jatropha curcas]
3 Hb_002007_280 0.1136808862 - - PREDICTED: kinesin-like protein KIFC3 [Jatropha curcas]
4 Hb_000345_410 0.1157856073 - - PREDICTED: kinesin-like protein KIFC3 [Jatropha curcas]
5 Hb_024973_020 0.1160392086 - - Protein regulator of cytokinesis, putative [Ricinus communis]
6 Hb_000365_210 0.1222547374 - - PREDICTED: cell division control protein 2 homolog C [Jatropha curcas]
7 Hb_001501_070 0.1253423733 - - PREDICTED: condensin complex subunit 2 [Jatropha curcas]
8 Hb_011360_130 0.1269238675 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000960_120 0.1296574731 - - PREDICTED: cell division cycle 20.1, cofactor of APC complex-like [Jatropha curcas]
10 Hb_001761_010 0.1387922243 - - PREDICTED: uncharacterized protein LOC105639282 [Jatropha curcas]
11 Hb_028487_120 0.1393301549 - - PREDICTED: HMG-Y-related protein B-like [Jatropha curcas]
12 Hb_013344_010 0.1461853057 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 [Jatropha curcas]
13 Hb_029510_130 0.1490878687 - - PREDICTED: malonate--CoA ligase [Jatropha curcas]
14 Hb_000638_260 0.1498072804 - - hypothetical protein JCGZ_06730 [Jatropha curcas]
15 Hb_038044_010 0.1504612903 - - 12-oxophytodienoate reductase 2 [Theobroma cacao]
16 Hb_000345_130 0.1530721202 - - unnamed protein product [Coffea canephora]
17 Hb_012653_010 0.1559252792 - - PREDICTED: subtilisin-like protease SBT2.5 [Jatropha curcas]
18 Hb_000321_080 0.1595037917 - - histone H4 [Zea mays]
19 Hb_000288_090 0.1626282471 - - unnamed protein product [Vitis vinifera]
20 Hb_007545_110 0.16293967 - - catalytic, putative [Ricinus communis]

Gene co-expression network

sample Hb_008406_100 Hb_008406_100 Hb_005162_130 Hb_005162_130 Hb_008406_100--Hb_005162_130 Hb_002007_280 Hb_002007_280 Hb_008406_100--Hb_002007_280 Hb_000345_410 Hb_000345_410 Hb_008406_100--Hb_000345_410 Hb_024973_020 Hb_024973_020 Hb_008406_100--Hb_024973_020 Hb_000365_210 Hb_000365_210 Hb_008406_100--Hb_000365_210 Hb_001501_070 Hb_001501_070 Hb_008406_100--Hb_001501_070 Hb_005162_130--Hb_000345_410 Hb_005162_130--Hb_002007_280 Hb_000345_130 Hb_000345_130 Hb_005162_130--Hb_000345_130 Hb_000349_230 Hb_000349_230 Hb_005162_130--Hb_000349_230 Hb_010998_050 Hb_010998_050 Hb_005162_130--Hb_010998_050 Hb_002007_280--Hb_000345_410 Hb_002007_280--Hb_000345_130 Hb_002007_280--Hb_000349_230 Hb_029510_130 Hb_029510_130 Hb_002007_280--Hb_029510_130 Hb_000321_080 Hb_000321_080 Hb_000345_410--Hb_000321_080 Hb_000345_410--Hb_010998_050 Hb_000345_410--Hb_000345_130 Hb_012653_010 Hb_012653_010 Hb_024973_020--Hb_012653_010 Hb_038044_010 Hb_038044_010 Hb_024973_020--Hb_038044_010 Hb_004218_050 Hb_004218_050 Hb_024973_020--Hb_004218_050 Hb_024973_020--Hb_001501_070 Hb_001761_010 Hb_001761_010 Hb_024973_020--Hb_001761_010 Hb_000365_210--Hb_001501_070 Hb_000288_090 Hb_000288_090 Hb_000365_210--Hb_000288_090 Hb_000365_210--Hb_001761_010 Hb_001584_360 Hb_001584_360 Hb_000365_210--Hb_001584_360 Hb_000028_530 Hb_000028_530 Hb_000365_210--Hb_000028_530 Hb_001478_020 Hb_001478_020 Hb_001501_070--Hb_001478_020 Hb_001501_070--Hb_038044_010 Hb_010180_030 Hb_010180_030 Hb_001501_070--Hb_010180_030 Hb_001501_070--Hb_029510_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.76137 2.26127 50.5276 13.5078 2.10279 2.83405
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.44066 0.870013 1.35836 3.17107 2.46843

CAGE analysis