Hb_000349_230

Information

Type -
Description -
Location Contig349: 239592-245148
Sequence    

Annotation

kegg
ID rcu:RCOM_1681670
description protein with unknown function
nr
ID XP_012087059.1
description PREDICTED: protein TPX2 [Jatropha curcas]
swissprot
ID F4I2H7
description Protein TPX2 OS=Arabidopsis thaliana GN=TPX2 PE=1 SV=1
trembl
ID A0A067JRU9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20724 PE=4 SV=1
Gene Ontology
ID GO:0005819
description protein tpx2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36314: 241779-245125
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000349_230 0.0 - - PREDICTED: protein TPX2 [Jatropha curcas]
2 Hb_002007_280 0.1210601185 - - PREDICTED: kinesin-like protein KIFC3 [Jatropha curcas]
3 Hb_000345_130 0.1211933089 - - unnamed protein product [Coffea canephora]
4 Hb_010998_050 0.1293251028 - - PREDICTED: kinesin-like protein KIF22 isoform X2 [Jatropha curcas]
5 Hb_005162_130 0.1364797828 - - PREDICTED: uncharacterized protein LOC105648433 isoform X2 [Jatropha curcas]
6 Hb_000345_410 0.1445154428 - - PREDICTED: kinesin-like protein KIFC3 [Jatropha curcas]
7 Hb_029510_130 0.1488177594 - - PREDICTED: malonate--CoA ligase [Jatropha curcas]
8 Hb_002307_020 0.1637560804 - - PREDICTED: histone H1-like [Jatropha curcas]
9 Hb_001780_080 0.1639215611 - - PREDICTED: tubulin beta-2 chain [Jatropha curcas]
10 Hb_000640_050 0.1651774391 - - DNA replication licensing factor MCM7, putative [Ricinus communis]
11 Hb_005901_030 0.1676096596 - - PREDICTED: phragmoplast orienting kinesin 2 isoform X1 [Jatropha curcas]
12 Hb_003399_100 0.1680018852 - - PREDICTED: putative cyclin-A3-1 [Jatropha curcas]
13 Hb_036790_030 0.174145334 - - PREDICTED: UPF0544 protein C5orf45 homolog [Jatropha curcas]
14 Hb_005725_150 0.1816107033 - - PREDICTED: kinesin-related protein 11 isoform X1 [Jatropha curcas]
15 Hb_002045_190 0.1873318564 - - PREDICTED: histone H2A variant 1 [Jatropha curcas]
16 Hb_001890_020 0.1890479412 - - hypothetical protein CICLE_v10025198mg [Citrus clementina]
17 Hb_038044_010 0.1907121135 - - 12-oxophytodienoate reductase 2 [Theobroma cacao]
18 Hb_000563_440 0.1934666282 - - PREDICTED: condensin-2 complex subunit H2 isoform X2 [Jatropha curcas]
19 Hb_002007_040 0.1939651724 - - unnamed protein product [Coffea canephora]
20 Hb_030627_070 0.1942572032 - - histone H4 [Zea mays]

Gene co-expression network

sample Hb_000349_230 Hb_000349_230 Hb_002007_280 Hb_002007_280 Hb_000349_230--Hb_002007_280 Hb_000345_130 Hb_000345_130 Hb_000349_230--Hb_000345_130 Hb_010998_050 Hb_010998_050 Hb_000349_230--Hb_010998_050 Hb_005162_130 Hb_005162_130 Hb_000349_230--Hb_005162_130 Hb_000345_410 Hb_000345_410 Hb_000349_230--Hb_000345_410 Hb_029510_130 Hb_029510_130 Hb_000349_230--Hb_029510_130 Hb_002007_280--Hb_000345_410 Hb_002007_280--Hb_005162_130 Hb_002007_280--Hb_000345_130 Hb_008406_100 Hb_008406_100 Hb_002007_280--Hb_008406_100 Hb_002007_280--Hb_029510_130 Hb_000345_130--Hb_005162_130 Hb_000345_130--Hb_010998_050 Hb_000345_130--Hb_000345_410 Hb_036790_030 Hb_036790_030 Hb_000345_130--Hb_036790_030 Hb_010998_050--Hb_036790_030 Hb_010998_050--Hb_000345_410 Hb_010998_050--Hb_002007_280 Hb_010998_050--Hb_005162_130 Hb_005162_130--Hb_000345_410 Hb_005162_130--Hb_008406_100 Hb_000345_410--Hb_008406_100 Hb_000321_080 Hb_000321_080 Hb_000345_410--Hb_000321_080 Hb_038044_010 Hb_038044_010 Hb_029510_130--Hb_038044_010 Hb_001501_070 Hb_001501_070 Hb_029510_130--Hb_001501_070 Hb_001478_020 Hb_001478_020 Hb_029510_130--Hb_001478_020 Hb_010180_030 Hb_010180_030 Hb_029510_130--Hb_010180_030 Hb_024973_020 Hb_024973_020 Hb_029510_130--Hb_024973_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.391331 0.308563 9.26746 2.11744 0.90241 0.546814
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.554766 1.25255 0.682639 1.31453 0.280241

CAGE analysis