Hb_002007_280

Information

Type -
Description -
Location Contig2007: 189821-194559
Sequence    

Annotation

kegg
ID rcu:RCOM_1431480
description Kinesin-3, putative
nr
ID XP_012089062.1
description PREDICTED: kinesin-like protein KIFC3 [Jatropha curcas]
swissprot
ID O81635
description Kinesin-4 OS=Arabidopsis thaliana GN=ATK4 PE=1 SV=2
trembl
ID A0A067JL11
description Kinesin-like protein OS=Jatropha curcas GN=JCGZ_23351 PE=3 SV=1
Gene Ontology
ID GO:0005871
description kinesin-like protein kifc3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20401: 190856-193696
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002007_280 0.0 - - PREDICTED: kinesin-like protein KIFC3 [Jatropha curcas]
2 Hb_000345_410 0.0619705858 - - PREDICTED: kinesin-like protein KIFC3 [Jatropha curcas]
3 Hb_005162_130 0.0770719222 - - PREDICTED: uncharacterized protein LOC105648433 isoform X2 [Jatropha curcas]
4 Hb_000345_130 0.1128676859 - - unnamed protein product [Coffea canephora]
5 Hb_008406_100 0.1136808862 - - PREDICTED: protein TPX2 isoform X2 [Jatropha curcas]
6 Hb_000349_230 0.1210601185 - - PREDICTED: protein TPX2 [Jatropha curcas]
7 Hb_029510_130 0.1265194045 - - PREDICTED: malonate--CoA ligase [Jatropha curcas]
8 Hb_010998_050 0.127824732 - - PREDICTED: kinesin-like protein KIF22 isoform X2 [Jatropha curcas]
9 Hb_000321_080 0.1285557984 - - histone H4 [Zea mays]
10 Hb_001501_070 0.1366913942 - - PREDICTED: condensin complex subunit 2 [Jatropha curcas]
11 Hb_001478_020 0.1384364117 desease resistance Gene Name: AAA thyroid hormone receptor interactor, putative [Ricinus communis]
12 Hb_005725_150 0.1427800688 - - PREDICTED: kinesin-related protein 11 isoform X1 [Jatropha curcas]
13 Hb_010180_030 0.1429229638 - - PREDICTED: WEB family protein At2g38370-like [Jatropha curcas]
14 Hb_002007_040 0.1436043511 - - unnamed protein product [Coffea canephora]
15 Hb_000365_210 0.1438665737 - - PREDICTED: cell division control protein 2 homolog C [Jatropha curcas]
16 Hb_000288_090 0.1441889342 - - unnamed protein product [Vitis vinifera]
17 Hb_011360_130 0.1457376557 - - conserved hypothetical protein [Ricinus communis]
18 Hb_038044_010 0.1530263609 - - 12-oxophytodienoate reductase 2 [Theobroma cacao]
19 Hb_002307_020 0.1553912586 - - PREDICTED: histone H1-like [Jatropha curcas]
20 Hb_001780_080 0.1563802252 - - PREDICTED: tubulin beta-2 chain [Jatropha curcas]

Gene co-expression network

sample Hb_002007_280 Hb_002007_280 Hb_000345_410 Hb_000345_410 Hb_002007_280--Hb_000345_410 Hb_005162_130 Hb_005162_130 Hb_002007_280--Hb_005162_130 Hb_000345_130 Hb_000345_130 Hb_002007_280--Hb_000345_130 Hb_008406_100 Hb_008406_100 Hb_002007_280--Hb_008406_100 Hb_000349_230 Hb_000349_230 Hb_002007_280--Hb_000349_230 Hb_029510_130 Hb_029510_130 Hb_002007_280--Hb_029510_130 Hb_000345_410--Hb_005162_130 Hb_000345_410--Hb_008406_100 Hb_000321_080 Hb_000321_080 Hb_000345_410--Hb_000321_080 Hb_010998_050 Hb_010998_050 Hb_000345_410--Hb_010998_050 Hb_000345_410--Hb_000345_130 Hb_005162_130--Hb_008406_100 Hb_005162_130--Hb_000345_130 Hb_005162_130--Hb_000349_230 Hb_005162_130--Hb_010998_050 Hb_000345_130--Hb_000349_230 Hb_000345_130--Hb_010998_050 Hb_036790_030 Hb_036790_030 Hb_000345_130--Hb_036790_030 Hb_024973_020 Hb_024973_020 Hb_008406_100--Hb_024973_020 Hb_000365_210 Hb_000365_210 Hb_008406_100--Hb_000365_210 Hb_001501_070 Hb_001501_070 Hb_008406_100--Hb_001501_070 Hb_000349_230--Hb_010998_050 Hb_000349_230--Hb_000345_410 Hb_000349_230--Hb_029510_130 Hb_038044_010 Hb_038044_010 Hb_029510_130--Hb_038044_010 Hb_029510_130--Hb_001501_070 Hb_001478_020 Hb_001478_020 Hb_029510_130--Hb_001478_020 Hb_010180_030 Hb_010180_030 Hb_029510_130--Hb_010180_030 Hb_029510_130--Hb_024973_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.0499 0.530646 14.6972 3.8802 0.878322 0.440409
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.783788 0.813601 0.876521 1.22934 0.446822

CAGE analysis