Hb_001501_070

Information

Type -
Description -
Location Contig1501: 85921-91875
Sequence    

Annotation

kegg
ID rcu:RCOM_1016740
description Condensin complex subunit, putative
nr
ID XP_012080611.1
description PREDICTED: condensin complex subunit 2 [Jatropha curcas]
swissprot
ID Q564K3
description Condensin complex subunit 2 OS=Arabidopsis thaliana GN=CAPH PE=1 SV=1
trembl
ID A0A067K3U9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13720 PE=4 SV=1
Gene Ontology
ID GO:0000796
description condensin complex subunit 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12566: 85783-89101 , PASA_asmbl_12567: 89236-91376 , PASA_asmbl_12568: 92854-98032
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001501_070 0.0 - - PREDICTED: condensin complex subunit 2 [Jatropha curcas]
2 Hb_001478_020 0.0767781452 desease resistance Gene Name: AAA thyroid hormone receptor interactor, putative [Ricinus communis]
3 Hb_038044_010 0.0863042308 - - 12-oxophytodienoate reductase 2 [Theobroma cacao]
4 Hb_010180_030 0.1013395308 - - PREDICTED: WEB family protein At2g38370-like [Jatropha curcas]
5 Hb_000365_210 0.1020972735 - - PREDICTED: cell division control protein 2 homolog C [Jatropha curcas]
6 Hb_029510_130 0.1082703386 - - PREDICTED: malonate--CoA ligase [Jatropha curcas]
7 Hb_024973_020 0.1126078927 - - Protein regulator of cytokinesis, putative [Ricinus communis]
8 Hb_001780_080 0.1133154289 - - PREDICTED: tubulin beta-2 chain [Jatropha curcas]
9 Hb_001761_010 0.1245197073 - - PREDICTED: uncharacterized protein LOC105639282 [Jatropha curcas]
10 Hb_008406_100 0.1253423733 - - PREDICTED: protein TPX2 isoform X2 [Jatropha curcas]
11 Hb_011360_130 0.1266176623 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003109_010 0.1268646808 - - PREDICTED: kinesin-like protein KIN12B [Jatropha curcas]
13 Hb_014497_070 0.1276133077 - - PREDICTED: cyclin-dependent kinase B2-2 [Jatropha curcas]
14 Hb_000190_220 0.127794076 - - PREDICTED: serine/threonine-protein kinase Nek2 [Jatropha curcas]
15 Hb_002007_040 0.1291052425 - - unnamed protein product [Coffea canephora]
16 Hb_007943_180 0.1320680816 - - PREDICTED: uncharacterized protein LOC105637734 [Jatropha curcas]
17 Hb_002232_310 0.1322287653 - - PREDICTED: uncharacterized protein LOC105635987 [Jatropha curcas]
18 Hb_003095_100 0.1328660997 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002007_280 0.1366913942 - - PREDICTED: kinesin-like protein KIFC3 [Jatropha curcas]
20 Hb_001584_360 0.1383640948 - - PREDICTED: serine/threonine-protein kinase haspin homolog hrk1 [Jatropha curcas]

Gene co-expression network

sample Hb_001501_070 Hb_001501_070 Hb_001478_020 Hb_001478_020 Hb_001501_070--Hb_001478_020 Hb_038044_010 Hb_038044_010 Hb_001501_070--Hb_038044_010 Hb_010180_030 Hb_010180_030 Hb_001501_070--Hb_010180_030 Hb_000365_210 Hb_000365_210 Hb_001501_070--Hb_000365_210 Hb_029510_130 Hb_029510_130 Hb_001501_070--Hb_029510_130 Hb_024973_020 Hb_024973_020 Hb_001501_070--Hb_024973_020 Hb_001478_020--Hb_010180_030 Hb_001478_020--Hb_038044_010 Hb_001780_080 Hb_001780_080 Hb_001478_020--Hb_001780_080 Hb_003784_040 Hb_003784_040 Hb_001478_020--Hb_003784_040 Hb_001478_020--Hb_029510_130 Hb_038044_010--Hb_029510_130 Hb_007545_110 Hb_007545_110 Hb_038044_010--Hb_007545_110 Hb_038044_010--Hb_024973_020 Hb_002942_120 Hb_002942_120 Hb_038044_010--Hb_002942_120 Hb_010180_030--Hb_003784_040 Hb_010180_030--Hb_001780_080 Hb_005725_150 Hb_005725_150 Hb_010180_030--Hb_005725_150 Hb_005504_040 Hb_005504_040 Hb_010180_030--Hb_005504_040 Hb_000288_090 Hb_000288_090 Hb_000365_210--Hb_000288_090 Hb_001761_010 Hb_001761_010 Hb_000365_210--Hb_001761_010 Hb_008406_100 Hb_008406_100 Hb_000365_210--Hb_008406_100 Hb_001584_360 Hb_001584_360 Hb_000365_210--Hb_001584_360 Hb_000028_530 Hb_000028_530 Hb_000365_210--Hb_000028_530 Hb_029510_130--Hb_010180_030 Hb_002007_280 Hb_002007_280 Hb_029510_130--Hb_002007_280 Hb_029510_130--Hb_024973_020 Hb_012653_010 Hb_012653_010 Hb_024973_020--Hb_012653_010 Hb_004218_050 Hb_004218_050 Hb_024973_020--Hb_004218_050 Hb_024973_020--Hb_008406_100 Hb_024973_020--Hb_001761_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.545685 0.64297 13.965 4.50849 0.263993 0.264224
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.488911 0.734411 0.464397 1.24508 1.36786

CAGE analysis