Hb_002942_120

Information

Type transcription factor
Description TF Family: bHLH
Location Contig2942: 126656-130695
Sequence    

Annotation

kegg
ID rcu:RCOM_1504040
description Transcription factor ICE1, putative
nr
ID XP_002511101.1
description Transcription factor ICE1, putative [Ricinus communis]
swissprot
ID Q9LSE2
description Transcription factor ICE1 OS=Arabidopsis thaliana GN=SCRM PE=1 SV=1
trembl
ID B9RA76
description Transcription factor ICE1, putative OS=Ricinus communis GN=RCOM_1504040 PE=4 SV=1
Gene Ontology
ID GO:0046983
description transcription factor ice1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30796: 126666-130595
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002942_120 0.0 transcription factor TF Family: bHLH Transcription factor ICE1, putative [Ricinus communis]
2 Hb_004218_050 0.1055875261 - - annexin [Manihot esculenta]
3 Hb_004846_230 0.1153429355 - - Chaperone protein dnaJ 8, chloroplast precursor, putative [Ricinus communis]
4 Hb_038044_010 0.121347851 - - 12-oxophytodienoate reductase 2 [Theobroma cacao]
5 Hb_005527_060 0.1272122035 - - malic enzyme, putative [Ricinus communis]
6 Hb_021346_050 0.1287003383 - - xylulose kinase, putative [Ricinus communis]
7 Hb_007943_180 0.1290898457 - - PREDICTED: uncharacterized protein LOC105637734 [Jatropha curcas]
8 Hb_001141_050 0.1330832273 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 2 isoform X2 [Jatropha curcas]
9 Hb_000792_050 0.1330873278 - - PREDICTED: acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, chloroplastic isoform X1 [Jatropha curcas]
10 Hb_000392_240 0.1362974721 - - DNA binding protein, putative [Ricinus communis]
11 Hb_004517_030 0.136690319 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000120_300 0.1379927095 - - PREDICTED: kinesin-like calmodulin-binding protein isoform X1 [Eucalyptus grandis]
13 Hb_024973_020 0.1383938852 - - Protein regulator of cytokinesis, putative [Ricinus communis]
14 Hb_007123_080 0.1404898137 - - big map kinase/bmk, putative [Ricinus communis]
15 Hb_000088_240 0.1411150888 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
16 Hb_003397_030 0.1417468648 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [Jatropha curcas]
17 Hb_002986_140 0.1422967566 - - PREDICTED: uncharacterized protein LOC105639684 [Jatropha curcas]
18 Hb_001343_120 0.142459344 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000935_080 0.1442225615 - - PREDICTED: branched-chain-amino-acid aminotransferase 3, chloroplastic isoform X1 [Jatropha curcas]
20 Hb_000032_200 0.1469230084 - - PREDICTED: probable polygalacturonase [Jatropha curcas]

Gene co-expression network

sample Hb_002942_120 Hb_002942_120 Hb_004218_050 Hb_004218_050 Hb_002942_120--Hb_004218_050 Hb_004846_230 Hb_004846_230 Hb_002942_120--Hb_004846_230 Hb_038044_010 Hb_038044_010 Hb_002942_120--Hb_038044_010 Hb_005527_060 Hb_005527_060 Hb_002942_120--Hb_005527_060 Hb_021346_050 Hb_021346_050 Hb_002942_120--Hb_021346_050 Hb_007943_180 Hb_007943_180 Hb_002942_120--Hb_007943_180 Hb_024973_020 Hb_024973_020 Hb_004218_050--Hb_024973_020 Hb_010683_070 Hb_010683_070 Hb_004218_050--Hb_010683_070 Hb_012653_010 Hb_012653_010 Hb_004218_050--Hb_012653_010 Hb_001343_120 Hb_001343_120 Hb_004218_050--Hb_001343_120 Hb_004223_170 Hb_004223_170 Hb_004218_050--Hb_004223_170 Hb_006788_090 Hb_006788_090 Hb_004846_230--Hb_006788_090 Hb_001396_040 Hb_001396_040 Hb_004846_230--Hb_001396_040 Hb_000500_330 Hb_000500_330 Hb_004846_230--Hb_000500_330 Hb_002794_040 Hb_002794_040 Hb_004846_230--Hb_002794_040 Hb_004846_230--Hb_004218_050 Hb_001501_070 Hb_001501_070 Hb_038044_010--Hb_001501_070 Hb_029510_130 Hb_029510_130 Hb_038044_010--Hb_029510_130 Hb_007545_110 Hb_007545_110 Hb_038044_010--Hb_007545_110 Hb_038044_010--Hb_024973_020 Hb_001478_020 Hb_001478_020 Hb_038044_010--Hb_001478_020 Hb_002432_050 Hb_002432_050 Hb_005527_060--Hb_002432_050 Hb_000310_060 Hb_000310_060 Hb_005527_060--Hb_000310_060 Hb_003398_040 Hb_003398_040 Hb_005527_060--Hb_003398_040 Hb_001587_040 Hb_001587_040 Hb_005527_060--Hb_001587_040 Hb_000589_170 Hb_000589_170 Hb_005527_060--Hb_000589_170 Hb_000011_560 Hb_000011_560 Hb_005527_060--Hb_000011_560 Hb_000120_300 Hb_000120_300 Hb_021346_050--Hb_000120_300 Hb_000032_610 Hb_000032_610 Hb_021346_050--Hb_000032_610 Hb_021346_050--Hb_007943_180 Hb_010868_040 Hb_010868_040 Hb_021346_050--Hb_010868_040 Hb_004102_080 Hb_004102_080 Hb_021346_050--Hb_004102_080 Hb_004531_080 Hb_004531_080 Hb_007943_180--Hb_004531_080 Hb_003020_190 Hb_003020_190 Hb_007943_180--Hb_003020_190 Hb_003095_100 Hb_003095_100 Hb_007943_180--Hb_003095_100 Hb_001123_310 Hb_001123_310 Hb_007943_180--Hb_001123_310 Hb_003109_010 Hb_003109_010 Hb_007943_180--Hb_003109_010 Hb_007943_180--Hb_000120_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.936982 3.04124 27.4393 6.27278 0.659823 0.947617
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.25659 0.952766 1.22686 4.04127 7.86163

CAGE analysis