Hb_001396_040

Information

Type -
Description -
Location Contig1396: 27418-29400
Sequence    

Annotation

kegg
ID pop:POPTR_0003s16670g
description POPTRDRAFT_554746; hypothetical protein
nr
ID XP_012085726.1
description PREDICTED: uncharacterized protein LOC105644845 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K3L1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17998 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10737: 27388-29547
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001396_040 0.0 - - PREDICTED: uncharacterized protein LOC105644845 [Jatropha curcas]
2 Hb_004846_230 0.121275935 - - Chaperone protein dnaJ 8, chloroplast precursor, putative [Ricinus communis]
3 Hb_000388_040 0.1322258401 - - PREDICTED: probable calcium-binding protein CML23 [Jatropha curcas]
4 Hb_006788_090 0.1350997163 - - -
5 Hb_000134_260 0.1379410179 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
6 Hb_001001_010 0.1419403395 - - PREDICTED: patatin-like protein 2 [Jatropha curcas]
7 Hb_000349_170 0.1436980846 - - PREDICTED: geraniol 8-hydroxylase-like [Jatropha curcas]
8 Hb_007076_010 0.147190007 - - calcium-dependent protein kinase, putative [Ricinus communis]
9 Hb_010407_150 0.1474300416 transcription factor TF Family: MYB hypothetical protein POPTR_0008s16660g [Populus trichocarpa]
10 Hb_000907_140 0.1529202444 - - PREDICTED: annexin D5-like [Jatropha curcas]
11 Hb_001579_190 0.1542451852 - - conserved hypothetical protein [Ricinus communis]
12 Hb_005695_070 0.1545934364 - - Cysteine-rich RLK 29 [Theobroma cacao]
13 Hb_003688_220 0.1549230746 - - unknown [Populus trichocarpa]
14 Hb_000494_010 0.1622495812 transcription factor TF Family: HB hypothetical protein POPTR_0014s04460g [Populus trichocarpa]
15 Hb_000500_330 0.1629617895 - - PREDICTED: bidirectional sugar transporter SWEET2a-like [Jatropha curcas]
16 Hb_000046_520 0.1638831174 - - PREDICTED: proline-rich receptor-like protein kinase PERK3 isoform X1 [Jatropha curcas]
17 Hb_149985_030 0.1665037994 - - PREDICTED: zeatin O-glucosyltransferase-like [Jatropha curcas]
18 Hb_001022_020 0.1665373389 transcription factor TF Family: NAC NAC transcription factor 038 [Jatropha curcas]
19 Hb_000110_240 0.1674099598 - - PREDICTED: uncharacterized protein LOC105642006 isoform X3 [Jatropha curcas]
20 Hb_046590_010 0.169730507 - - Cycloeucalenol cycloisomerase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001396_040 Hb_001396_040 Hb_004846_230 Hb_004846_230 Hb_001396_040--Hb_004846_230 Hb_000388_040 Hb_000388_040 Hb_001396_040--Hb_000388_040 Hb_006788_090 Hb_006788_090 Hb_001396_040--Hb_006788_090 Hb_000134_260 Hb_000134_260 Hb_001396_040--Hb_000134_260 Hb_001001_010 Hb_001001_010 Hb_001396_040--Hb_001001_010 Hb_000349_170 Hb_000349_170 Hb_001396_040--Hb_000349_170 Hb_004846_230--Hb_006788_090 Hb_002942_120 Hb_002942_120 Hb_004846_230--Hb_002942_120 Hb_000500_330 Hb_000500_330 Hb_004846_230--Hb_000500_330 Hb_002794_040 Hb_002794_040 Hb_004846_230--Hb_002794_040 Hb_004218_050 Hb_004218_050 Hb_004846_230--Hb_004218_050 Hb_003767_030 Hb_003767_030 Hb_000388_040--Hb_003767_030 Hb_012753_150 Hb_012753_150 Hb_000388_040--Hb_012753_150 Hb_000388_040--Hb_000349_170 Hb_002218_050 Hb_002218_050 Hb_000388_040--Hb_002218_050 Hb_010267_020 Hb_010267_020 Hb_000388_040--Hb_010267_020 Hb_007441_290 Hb_007441_290 Hb_000388_040--Hb_007441_290 Hb_006788_090--Hb_000500_330 Hb_006788_090--Hb_002942_120 Hb_000483_270 Hb_000483_270 Hb_006788_090--Hb_000483_270 Hb_000392_240 Hb_000392_240 Hb_006788_090--Hb_000392_240 Hb_004712_090 Hb_004712_090 Hb_000134_260--Hb_004712_090 Hb_004551_010 Hb_004551_010 Hb_000134_260--Hb_004551_010 Hb_003688_220 Hb_003688_220 Hb_000134_260--Hb_003688_220 Hb_002374_200 Hb_002374_200 Hb_000134_260--Hb_002374_200 Hb_011918_030 Hb_011918_030 Hb_000134_260--Hb_011918_030 Hb_000035_140 Hb_000035_140 Hb_000134_260--Hb_000035_140 Hb_010407_150 Hb_010407_150 Hb_001001_010--Hb_010407_150 Hb_005695_070 Hb_005695_070 Hb_001001_010--Hb_005695_070 Hb_149985_030 Hb_149985_030 Hb_001001_010--Hb_149985_030 Hb_001001_010--Hb_000349_170 Hb_002995_010 Hb_002995_010 Hb_001001_010--Hb_002995_010 Hb_007076_010 Hb_007076_010 Hb_001001_010--Hb_007076_010 Hb_000349_170--Hb_149985_030 Hb_000349_170--Hb_005695_070 Hb_001913_070 Hb_001913_070 Hb_000349_170--Hb_001913_070 Hb_022406_010 Hb_022406_010 Hb_000349_170--Hb_022406_010 Hb_000349_170--Hb_003767_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.341001 11.8075 58.0474 9.52135 0.283603 0.0712309
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.36117 1.77526 0.737581 2.94084 9.79257

CAGE analysis