Hb_006788_090

Information

Type -
Description -
Location Contig6788: 45740-48560
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53652: 45624-48555 , PASA_asmbl_53653: 45593-47959 , PASA_asmbl_53654: 46156-46379
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006788_090 0.0 - - -
2 Hb_004846_230 0.1114241465 - - Chaperone protein dnaJ 8, chloroplast precursor, putative [Ricinus communis]
3 Hb_001396_040 0.1350997163 - - PREDICTED: uncharacterized protein LOC105644845 [Jatropha curcas]
4 Hb_000500_330 0.1570109427 - - PREDICTED: bidirectional sugar transporter SWEET2a-like [Jatropha curcas]
5 Hb_002942_120 0.158080596 transcription factor TF Family: bHLH Transcription factor ICE1, putative [Ricinus communis]
6 Hb_000483_270 0.1732665573 - - PREDICTED: uncharacterized protein LOC105632352 [Jatropha curcas]
7 Hb_000392_240 0.1786373182 - - DNA binding protein, putative [Ricinus communis]
8 Hb_001579_190 0.1788907424 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002400_170 0.1794662203 - - PREDICTED: adenine phosphoribosyltransferase 5 [Jatropha curcas]
10 Hb_008643_220 0.1842530423 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 [Jatropha curcas]
11 Hb_000110_240 0.185125437 - - PREDICTED: uncharacterized protein LOC105642006 isoform X3 [Jatropha curcas]
12 Hb_038044_010 0.1890722098 - - 12-oxophytodienoate reductase 2 [Theobroma cacao]
13 Hb_000907_140 0.1901388 - - PREDICTED: annexin D5-like [Jatropha curcas]
14 Hb_000260_240 0.1937654892 - - hypothetical protein JCGZ_00622 [Jatropha curcas]
15 Hb_003638_040 0.1968854682 - - kinesin heavy chain, putative [Ricinus communis]
16 Hb_000494_010 0.1982964947 transcription factor TF Family: HB hypothetical protein POPTR_0014s04460g [Populus trichocarpa]
17 Hb_054865_010 0.1989753632 - - PREDICTED: uncharacterized membrane protein At1g16860-like [Jatropha curcas]
18 Hb_004218_050 0.199973794 - - annexin [Manihot esculenta]
19 Hb_004102_080 0.2013563842 - - PREDICTED: acyl-protein thioesterase 2 [Jatropha curcas]
20 Hb_002435_090 0.2023400179 - - PREDICTED: membrane-associated 30 kDa protein, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_006788_090 Hb_006788_090 Hb_004846_230 Hb_004846_230 Hb_006788_090--Hb_004846_230 Hb_001396_040 Hb_001396_040 Hb_006788_090--Hb_001396_040 Hb_000500_330 Hb_000500_330 Hb_006788_090--Hb_000500_330 Hb_002942_120 Hb_002942_120 Hb_006788_090--Hb_002942_120 Hb_000483_270 Hb_000483_270 Hb_006788_090--Hb_000483_270 Hb_000392_240 Hb_000392_240 Hb_006788_090--Hb_000392_240 Hb_004846_230--Hb_002942_120 Hb_004846_230--Hb_001396_040 Hb_004846_230--Hb_000500_330 Hb_002794_040 Hb_002794_040 Hb_004846_230--Hb_002794_040 Hb_004218_050 Hb_004218_050 Hb_004846_230--Hb_004218_050 Hb_000388_040 Hb_000388_040 Hb_001396_040--Hb_000388_040 Hb_000134_260 Hb_000134_260 Hb_001396_040--Hb_000134_260 Hb_001001_010 Hb_001001_010 Hb_001396_040--Hb_001001_010 Hb_000349_170 Hb_000349_170 Hb_001396_040--Hb_000349_170 Hb_000110_240 Hb_000110_240 Hb_000500_330--Hb_000110_240 Hb_000494_010 Hb_000494_010 Hb_000500_330--Hb_000494_010 Hb_000028_150 Hb_000028_150 Hb_000500_330--Hb_000028_150 Hb_005116_130 Hb_005116_130 Hb_000500_330--Hb_005116_130 Hb_046590_010 Hb_046590_010 Hb_000500_330--Hb_046590_010 Hb_002942_120--Hb_004218_050 Hb_038044_010 Hb_038044_010 Hb_002942_120--Hb_038044_010 Hb_005527_060 Hb_005527_060 Hb_002942_120--Hb_005527_060 Hb_021346_050 Hb_021346_050 Hb_002942_120--Hb_021346_050 Hb_007943_180 Hb_007943_180 Hb_002942_120--Hb_007943_180 Hb_007317_100 Hb_007317_100 Hb_000483_270--Hb_007317_100 Hb_002843_130 Hb_002843_130 Hb_000483_270--Hb_002843_130 Hb_000123_360 Hb_000123_360 Hb_000483_270--Hb_000123_360 Hb_000961_060 Hb_000961_060 Hb_000483_270--Hb_000961_060 Hb_002078_120 Hb_002078_120 Hb_000483_270--Hb_002078_120 Hb_000483_270--Hb_000500_330 Hb_000392_240--Hb_005527_060 Hb_000446_040 Hb_000446_040 Hb_000392_240--Hb_000446_040 Hb_000392_240--Hb_002942_120 Hb_003106_200 Hb_003106_200 Hb_000392_240--Hb_003106_200 Hb_000392_240--Hb_002794_040 Hb_000011_560 Hb_000011_560 Hb_000392_240--Hb_000011_560
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.623116 7.15963 60.6816 5.7718 0.146434 0.102129
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.03919 3.20581 1.85082 6.37094 13.1204

CAGE analysis