Hb_002794_040

Information

Type -
Description -
Location Contig2794: 69734-74926
Sequence    

Annotation

kegg
ID rcu:RCOM_1297010
description kinase, putative
nr
ID XP_012078821.1
description PREDICTED: C-type lectin receptor-like tyrosine-protein kinase At1g52310 [Jatropha curcas]
swissprot
ID Q9C823
description C-type lectin receptor-like tyrosine-protein kinase At1g52310 OS=Arabidopsis thaliana GN=At1g52310 PE=2 SV=1
trembl
ID A0A067KJI7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13355 PE=4 SV=1
Gene Ontology
ID GO:0016020
description c-type lectin receptor-like tyrosine-protein kinase at1g52310

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29136: 70852-72654
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002794_040 0.0 - - PREDICTED: C-type lectin receptor-like tyrosine-protein kinase At1g52310 [Jatropha curcas]
2 Hb_004846_230 0.1305920284 - - Chaperone protein dnaJ 8, chloroplast precursor, putative [Ricinus communis]
3 Hb_002435_090 0.1470036319 - - PREDICTED: membrane-associated 30 kDa protein, chloroplastic [Jatropha curcas]
4 Hb_000392_240 0.1496581168 - - DNA binding protein, putative [Ricinus communis]
5 Hb_188739_010 0.1521231753 - - protein binding protein, putative [Ricinus communis]
6 Hb_001343_120 0.1555782484 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000046_520 0.1582148516 - - PREDICTED: proline-rich receptor-like protein kinase PERK3 isoform X1 [Jatropha curcas]
8 Hb_000032_200 0.1591952114 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
9 Hb_002942_120 0.1642884897 transcription factor TF Family: bHLH Transcription factor ICE1, putative [Ricinus communis]
10 Hb_006935_040 0.1658976326 - - PREDICTED: uncharacterized protein LOC105629236 [Jatropha curcas]
11 Hb_007123_080 0.1661992665 - - big map kinase/bmk, putative [Ricinus communis]
12 Hb_000347_140 0.1684465979 - - PREDICTED: protein FLUORESCENT IN BLUE LIGHT, chloroplastic isoform X2 [Jatropha curcas]
13 Hb_004517_030 0.171305273 - - conserved hypothetical protein [Ricinus communis]
14 Hb_107078_010 0.1721284351 - - -
15 Hb_001975_050 0.1731243199 - - Tyrosine-specific transport protein, putative [Ricinus communis]
16 Hb_003106_200 0.1735507264 - - PREDICTED: uncharacterized protein LOC105640430 isoform X1 [Jatropha curcas]
17 Hb_001102_190 0.1750651914 - - PREDICTED: uncharacterized protein LOC105112724 [Populus euphratica]
18 Hb_000207_140 0.1763408616 - - hypothetical protein POPTR_0019s11310g [Populus trichocarpa]
19 Hb_000928_250 0.1798205933 - - calcium ion binding protein, putative [Ricinus communis]
20 Hb_140360_010 0.1807619851 - - PREDICTED: 50S ribosomal protein L11, chloroplastic-like [Populus euphratica]

Gene co-expression network

sample Hb_002794_040 Hb_002794_040 Hb_004846_230 Hb_004846_230 Hb_002794_040--Hb_004846_230 Hb_002435_090 Hb_002435_090 Hb_002794_040--Hb_002435_090 Hb_000392_240 Hb_000392_240 Hb_002794_040--Hb_000392_240 Hb_188739_010 Hb_188739_010 Hb_002794_040--Hb_188739_010 Hb_001343_120 Hb_001343_120 Hb_002794_040--Hb_001343_120 Hb_000046_520 Hb_000046_520 Hb_002794_040--Hb_000046_520 Hb_006788_090 Hb_006788_090 Hb_004846_230--Hb_006788_090 Hb_002942_120 Hb_002942_120 Hb_004846_230--Hb_002942_120 Hb_001396_040 Hb_001396_040 Hb_004846_230--Hb_001396_040 Hb_000500_330 Hb_000500_330 Hb_004846_230--Hb_000500_330 Hb_004218_050 Hb_004218_050 Hb_004846_230--Hb_004218_050 Hb_000207_140 Hb_000207_140 Hb_002435_090--Hb_000207_140 Hb_002435_090--Hb_188739_010 Hb_002435_090--Hb_001343_120 Hb_003992_050 Hb_003992_050 Hb_002435_090--Hb_003992_050 Hb_001975_050 Hb_001975_050 Hb_002435_090--Hb_001975_050 Hb_140360_010 Hb_140360_010 Hb_002435_090--Hb_140360_010 Hb_005527_060 Hb_005527_060 Hb_000392_240--Hb_005527_060 Hb_000446_040 Hb_000446_040 Hb_000392_240--Hb_000446_040 Hb_000392_240--Hb_002942_120 Hb_003106_200 Hb_003106_200 Hb_000392_240--Hb_003106_200 Hb_000011_560 Hb_000011_560 Hb_000392_240--Hb_000011_560 Hb_188739_010--Hb_000207_140 Hb_188739_010--Hb_001975_050 Hb_000347_140 Hb_000347_140 Hb_188739_010--Hb_000347_140 Hb_000300_710 Hb_000300_710 Hb_188739_010--Hb_000300_710 Hb_188739_010--Hb_001343_120 Hb_000042_390 Hb_000042_390 Hb_001343_120--Hb_000042_390 Hb_001343_120--Hb_001975_050 Hb_001343_120--Hb_000207_140 Hb_001343_120--Hb_004218_050 Hb_002540_060 Hb_002540_060 Hb_001343_120--Hb_002540_060 Hb_008775_030 Hb_008775_030 Hb_000046_520--Hb_008775_030 Hb_003038_110 Hb_003038_110 Hb_000046_520--Hb_003038_110 Hb_107078_010 Hb_107078_010 Hb_000046_520--Hb_107078_010 Hb_007576_130 Hb_007576_130 Hb_000046_520--Hb_007576_130 Hb_000046_520--Hb_000392_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.509191 2.2962 10.7747 1.67948 0.433696 0.635343
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.774251 0.631709 0 0.926659 2.98239

CAGE analysis