Hb_140360_010

Information

Type -
Description -
Location Contig140360: 20275-22930
Sequence    

Annotation

kegg
ID pop:POPTR_0001s45510g
description POPTRDRAFT_176971; hypothetical protein
nr
ID XP_011012405.1
description PREDICTED: 50S ribosomal protein L11, chloroplastic-like [Populus euphratica]
swissprot
ID Q9MAP3
description 50S ribosomal protein L11, chloroplastic OS=Arabidopsis thaliana GN=RPL11 PE=2 SV=1
trembl
ID B9GJ65
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s45510g PE=3 SV=2
Gene Ontology
ID GO:0009570
description 50s ribosomal protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10929: 20176-22882
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_140360_010 0.0 - - PREDICTED: 50S ribosomal protein L11, chloroplastic-like [Populus euphratica]
2 Hb_001519_170 0.0867850568 - - PREDICTED: K(+) efflux antiporter 3, chloroplastic [Jatropha curcas]
3 Hb_002435_090 0.1172372481 - - PREDICTED: membrane-associated 30 kDa protein, chloroplastic [Jatropha curcas]
4 Hb_000574_470 0.1190801885 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial isoform X1 [Jatropha curcas]
5 Hb_172632_060 0.125816596 - - PREDICTED: uncharacterized protein LOC105646135 isoform X1 [Jatropha curcas]
6 Hb_001711_060 0.129078383 - - PREDICTED: ferredoxin isoform X1 [Jatropha curcas]
7 Hb_001366_350 0.1319434083 - - PREDICTED: peptidyl-prolyl cis-trans isomerase isoform X2 [Jatropha curcas]
8 Hb_001638_310 0.1387542146 - - ribonucleoprotein, chloroplast, putative [Ricinus communis]
9 Hb_000212_250 0.139689017 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000146_030 0.1425074488 - - PREDICTED: 50S ribosomal protein L10, chloroplastic [Jatropha curcas]
11 Hb_004517_030 0.1438967579 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000392_450 0.1440466089 - - PREDICTED: isochorismate synthase 2, chloroplastic [Jatropha curcas]
13 Hb_003992_050 0.1452743698 - - delta 9 desaturase, putative [Ricinus communis]
14 Hb_153553_040 0.1457289676 - - hypothetical protein JCGZ_19478 [Jatropha curcas]
15 Hb_005000_060 0.1475742994 - - PREDICTED: uncharacterized protein LOC105637867 [Jatropha curcas]
16 Hb_001386_090 0.1480023714 - - PREDICTED: uncharacterized protein LOC105632529 [Jatropha curcas]
17 Hb_000207_140 0.149472637 - - hypothetical protein POPTR_0019s11310g [Populus trichocarpa]
18 Hb_007217_010 0.1536873006 - - PREDICTED: glycerol-3-phosphate acyltransferase, chloroplastic [Jatropha curcas]
19 Hb_188739_010 0.1565540695 - - protein binding protein, putative [Ricinus communis]
20 Hb_000637_070 0.1585606508 - - PREDICTED: uncharacterized protein LOC105650668 [Jatropha curcas]

Gene co-expression network

sample Hb_140360_010 Hb_140360_010 Hb_001519_170 Hb_001519_170 Hb_140360_010--Hb_001519_170 Hb_002435_090 Hb_002435_090 Hb_140360_010--Hb_002435_090 Hb_000574_470 Hb_000574_470 Hb_140360_010--Hb_000574_470 Hb_172632_060 Hb_172632_060 Hb_140360_010--Hb_172632_060 Hb_001711_060 Hb_001711_060 Hb_140360_010--Hb_001711_060 Hb_001366_350 Hb_001366_350 Hb_140360_010--Hb_001366_350 Hb_001519_170--Hb_001711_060 Hb_000146_030 Hb_000146_030 Hb_001519_170--Hb_000146_030 Hb_000000_180 Hb_000000_180 Hb_001519_170--Hb_000000_180 Hb_001519_170--Hb_001366_350 Hb_001386_090 Hb_001386_090 Hb_001519_170--Hb_001386_090 Hb_000207_140 Hb_000207_140 Hb_002435_090--Hb_000207_140 Hb_188739_010 Hb_188739_010 Hb_002435_090--Hb_188739_010 Hb_001343_120 Hb_001343_120 Hb_002435_090--Hb_001343_120 Hb_003992_050 Hb_003992_050 Hb_002435_090--Hb_003992_050 Hb_001975_050 Hb_001975_050 Hb_002435_090--Hb_001975_050 Hb_000574_470--Hb_172632_060 Hb_011476_030 Hb_011476_030 Hb_000574_470--Hb_011476_030 Hb_003376_390 Hb_003376_390 Hb_000574_470--Hb_003376_390 Hb_005618_080 Hb_005618_080 Hb_000574_470--Hb_005618_080 Hb_000212_250 Hb_000212_250 Hb_000574_470--Hb_000212_250 Hb_001959_060 Hb_001959_060 Hb_000574_470--Hb_001959_060 Hb_172632_060--Hb_003376_390 Hb_172632_060--Hb_001959_060 Hb_172632_060--Hb_005618_080 Hb_004871_010 Hb_004871_010 Hb_172632_060--Hb_004871_010 Hb_004117_040 Hb_004117_040 Hb_172632_060--Hb_004117_040 Hb_001711_060--Hb_001386_090 Hb_003397_030 Hb_003397_030 Hb_001711_060--Hb_003397_030 Hb_012653_030 Hb_012653_030 Hb_001711_060--Hb_012653_030 Hb_001711_060--Hb_000146_030 Hb_000438_130 Hb_000438_130 Hb_001711_060--Hb_000438_130 Hb_001366_350--Hb_000146_030 Hb_001366_350--Hb_001711_060 Hb_004007_170 Hb_004007_170 Hb_001366_350--Hb_004007_170 Hb_005488_160 Hb_005488_160 Hb_001366_350--Hb_005488_160 Hb_011114_020 Hb_011114_020 Hb_001366_350--Hb_011114_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.7917 35.4512 239.618 25.1904 19.3233 17.1947
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.9597 37.2317 11.6893 12.5398 109.778

CAGE analysis