Hb_011114_020

Information

Type -
Description -
Location Contig11114: 25263-25826
Sequence    

Annotation

kegg
ID pxb:103965841
description 50S ribosomal protein L12-1, chloroplastic-like
nr
ID XP_012066324.1
description PREDICTED: 50S ribosomal protein L12-1, chloroplastic-like [Jatropha curcas]
swissprot
ID P36210
description 50S ribosomal protein L12-1, chloroplastic OS=Arabidopsis thaliana GN=RPL12A PE=2 SV=1
trembl
ID A0A067L3E5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23894 PE=3 SV=1
Gene Ontology
ID GO:0000311
description 50s ribosomal protein chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03441: 25203-26529
cDNA
(Sanger)
(ID:Location)		 021_C06.ab1: 25203-25956 , 023_P22.ab1: 25205-25599 , 024_H20.ab1: 25203-25930 , 041_G07.ab1: 25203-25971 , 043_D02.ab1: 25203-25971

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011114_020 0.0 - - PREDICTED: 50S ribosomal protein L12-1, chloroplastic-like [Jatropha curcas]
2 Hb_000368_120 0.0838844302 - - PREDICTED: uncharacterized protein LOC105633862 [Jatropha curcas]
3 Hb_002411_100 0.1009682123 - - PREDICTED: uncharacterized protein LOC105631266 [Jatropha curcas]
4 Hb_000005_130 0.1015099035 - - hypothetical protein POPTR_0004s22660g [Populus trichocarpa]
5 Hb_000442_070 0.1024333693 - - PREDICTED: uncharacterized protein LOC105645538 [Jatropha curcas]
6 Hb_006620_070 0.1061720611 - - chloroplast 30S ribosomal protein S13 [Hevea brasiliensis]
7 Hb_000146_030 0.109899216 - - PREDICTED: 50S ribosomal protein L10, chloroplastic [Jatropha curcas]
8 Hb_004459_060 0.1111687347 - - 50S ribosomal protein L34, chloroplast precursor, putative [Ricinus communis]
9 Hb_005917_020 0.1122468169 - - Winged-helix DNA-binding transcription factor family protein [Theobroma cacao]
10 Hb_001405_090 0.1143728205 - - PREDICTED: photosynthetic NDH subunit of subcomplex B 5, chloroplastic [Jatropha curcas]
11 Hb_002232_380 0.1148202436 - - malate dehydrogenase, putative [Ricinus communis]
12 Hb_006829_080 0.1148506245 - - PREDICTED: protein LHCP TRANSLOCATION DEFECT [Jatropha curcas]
13 Hb_000402_020 0.1155249903 - - PREDICTED: 2-phytyl-1,4-beta-naphthoquinone methyltransferase, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_003948_020 0.1189212922 - - PREDICTED: transmembrane protein 41B [Jatropha curcas]
15 Hb_003038_100 0.1202732797 - - PREDICTED: pheophytinase, chloroplastic [Jatropha curcas]
16 Hb_023732_050 0.1224110393 - - aldo-keto reductase, putative [Ricinus communis]
17 Hb_000000_180 0.1228342351 - - PREDICTED: 30S ribosomal protein S9, chloroplastic-like [Populus euphratica]
18 Hb_007694_060 0.1231540018 - - PREDICTED: 50S ribosomal protein L35, chloroplastic [Jatropha curcas]
19 Hb_001959_060 0.1232581252 - - PREDICTED: carboxyl-terminal-processing peptidase 2, chloroplastic [Jatropha curcas]
20 Hb_003664_030 0.1235682025 - - PREDICTED: mitochondrial carnitine/acylcarnitine carrier-like protein [Jatropha curcas]

Gene co-expression network

sample Hb_011114_020 Hb_011114_020 Hb_000368_120 Hb_000368_120 Hb_011114_020--Hb_000368_120 Hb_002411_100 Hb_002411_100 Hb_011114_020--Hb_002411_100 Hb_000005_130 Hb_000005_130 Hb_011114_020--Hb_000005_130 Hb_000442_070 Hb_000442_070 Hb_011114_020--Hb_000442_070 Hb_006620_070 Hb_006620_070 Hb_011114_020--Hb_006620_070 Hb_000146_030 Hb_000146_030 Hb_011114_020--Hb_000146_030 Hb_003664_030 Hb_003664_030 Hb_000368_120--Hb_003664_030 Hb_001343_020 Hb_001343_020 Hb_000368_120--Hb_001343_020 Hb_000368_120--Hb_000442_070 Hb_000175_050 Hb_000175_050 Hb_000368_120--Hb_000175_050 Hb_003948_020 Hb_003948_020 Hb_000368_120--Hb_003948_020 Hb_002411_100--Hb_003948_020 Hb_010557_010 Hb_010557_010 Hb_002411_100--Hb_010557_010 Hb_000703_070 Hb_000703_070 Hb_002411_100--Hb_000703_070 Hb_001047_180 Hb_001047_180 Hb_002411_100--Hb_001047_180 Hb_004459_060 Hb_004459_060 Hb_002411_100--Hb_004459_060 Hb_005563_040 Hb_005563_040 Hb_002411_100--Hb_005563_040 Hb_006829_080 Hb_006829_080 Hb_000005_130--Hb_006829_080 Hb_007426_170 Hb_007426_170 Hb_000005_130--Hb_007426_170 Hb_007694_060 Hb_007694_060 Hb_000005_130--Hb_007694_060 Hb_000802_050 Hb_000802_050 Hb_000005_130--Hb_000802_050 Hb_000005_130--Hb_006620_070 Hb_001959_060 Hb_001959_060 Hb_000005_130--Hb_001959_060 Hb_000442_070--Hb_010557_010 Hb_000442_070--Hb_005563_040 Hb_000442_070--Hb_002411_100 Hb_000442_070--Hb_006620_070 Hb_000442_070--Hb_003948_020 Hb_006620_070--Hb_004459_060 Hb_001405_090 Hb_001405_090 Hb_006620_070--Hb_001405_090 Hb_006620_070--Hb_007694_060 Hb_006620_070--Hb_002411_100 Hb_000146_030--Hb_001047_180 Hb_000146_030--Hb_004459_060 Hb_000146_030--Hb_002411_100 Hb_000402_020 Hb_000402_020 Hb_000146_030--Hb_000402_020 Hb_004007_170 Hb_004007_170 Hb_000146_030--Hb_004007_170 Hb_000322_040 Hb_000322_040 Hb_000146_030--Hb_000322_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.0566 42.9018 312.662 83.9987 11.7851 19.4375
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
56.3217 81.3724 24.7491 30.454 331.518

CAGE analysis