Hb_000368_120

Information

Type -
Description -
Location Contig368: 160008-160823
Sequence    

Annotation

kegg
ID rcu:RCOM_1595980
description ATP-dependent peptidase, putative
nr
ID XP_012071948.1
description PREDICTED: uncharacterized protein LOC105633862 [Jatropha curcas]
swissprot
ID P36774
description Lon protease 2 OS=Myxococcus xanthus GN=lon2 PE=1 SV=3
trembl
ID E6NU58
description JHL18I08.2 protein OS=Jatropha curcas GN=JHL18I08.2 PE=4 SV=1
Gene Ontology
ID GO:0004176
description lon peptidase n-terminal domain and ring finger protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37817: 158650-159118 , PASA_asmbl_37818: 143832-161039
cDNA
(Sanger)
(ID:Location)		 019_I22.ab1: 159830-160530

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000368_120 0.0 - - PREDICTED: uncharacterized protein LOC105633862 [Jatropha curcas]
2 Hb_011114_020 0.0838844302 - - PREDICTED: 50S ribosomal protein L12-1, chloroplastic-like [Jatropha curcas]
3 Hb_003664_030 0.116472769 - - PREDICTED: mitochondrial carnitine/acylcarnitine carrier-like protein [Jatropha curcas]
4 Hb_001343_020 0.1176495286 - - ABC transporter family protein [Hevea brasiliensis]
5 Hb_000442_070 0.1192301432 - - PREDICTED: uncharacterized protein LOC105645538 [Jatropha curcas]
6 Hb_000175_050 0.1292504633 - - -
7 Hb_003948_020 0.1326148039 - - PREDICTED: transmembrane protein 41B [Jatropha curcas]
8 Hb_023732_050 0.136179227 - - aldo-keto reductase, putative [Ricinus communis]
9 Hb_000264_280 0.1411185622 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Jatropha curcas]
10 Hb_000548_060 0.1419502073 - - PREDICTED: fruit protein pKIWI502 [Jatropha curcas]
11 Hb_002411_100 0.1423136436 - - PREDICTED: uncharacterized protein LOC105631266 [Jatropha curcas]
12 Hb_005784_030 0.145617174 - - PREDICTED: uncharacterized protein LOC105645162 isoform X2 [Jatropha curcas]
13 Hb_015175_040 0.1465157491 - - conserved hypothetical protein [Ricinus communis]
14 Hb_027445_100 0.1467240911 - - PREDICTED: probable monodehydroascorbate reductase, cytoplasmic isoform 2 [Jatropha curcas]
15 Hb_004117_040 0.1467490855 - - PREDICTED: uncharacterized protein LOC105638287 [Jatropha curcas]
16 Hb_000189_150 0.1481795095 transcription factor TF Family: bZIP PREDICTED: light-inducible protein CPRF2 [Jatropha curcas]
17 Hb_005917_020 0.1487760948 - - Winged-helix DNA-binding transcription factor family protein [Theobroma cacao]
18 Hb_000834_060 0.1491120296 - - PREDICTED: probable chlorophyll(ide) b reductase NYC1, chloroplastic isoform X1 [Jatropha curcas]
19 Hb_006829_080 0.150457181 - - PREDICTED: protein LHCP TRANSLOCATION DEFECT [Jatropha curcas]
20 Hb_002232_380 0.1515912183 - - malate dehydrogenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000368_120 Hb_000368_120 Hb_011114_020 Hb_011114_020 Hb_000368_120--Hb_011114_020 Hb_003664_030 Hb_003664_030 Hb_000368_120--Hb_003664_030 Hb_001343_020 Hb_001343_020 Hb_000368_120--Hb_001343_020 Hb_000442_070 Hb_000442_070 Hb_000368_120--Hb_000442_070 Hb_000175_050 Hb_000175_050 Hb_000368_120--Hb_000175_050 Hb_003948_020 Hb_003948_020 Hb_000368_120--Hb_003948_020 Hb_002411_100 Hb_002411_100 Hb_011114_020--Hb_002411_100 Hb_000005_130 Hb_000005_130 Hb_011114_020--Hb_000005_130 Hb_011114_020--Hb_000442_070 Hb_006620_070 Hb_006620_070 Hb_011114_020--Hb_006620_070 Hb_000146_030 Hb_000146_030 Hb_011114_020--Hb_000146_030 Hb_000264_280 Hb_000264_280 Hb_003664_030--Hb_000264_280 Hb_003664_030--Hb_003948_020 Hb_005784_030 Hb_005784_030 Hb_003664_030--Hb_005784_030 Hb_148146_010 Hb_148146_010 Hb_003664_030--Hb_148146_010 Hb_003752_090 Hb_003752_090 Hb_003664_030--Hb_003752_090 Hb_000834_060 Hb_000834_060 Hb_003664_030--Hb_000834_060 Hb_000548_060 Hb_000548_060 Hb_001343_020--Hb_000548_060 Hb_001343_020--Hb_000264_280 Hb_001343_020--Hb_000175_050 Hb_011053_030 Hb_011053_030 Hb_001343_020--Hb_011053_030 Hb_000032_390 Hb_000032_390 Hb_001343_020--Hb_000032_390 Hb_010557_010 Hb_010557_010 Hb_000442_070--Hb_010557_010 Hb_005563_040 Hb_005563_040 Hb_000442_070--Hb_005563_040 Hb_000442_070--Hb_002411_100 Hb_000442_070--Hb_006620_070 Hb_000442_070--Hb_003948_020 Hb_000175_050--Hb_011053_030 Hb_007904_040 Hb_007904_040 Hb_000175_050--Hb_007904_040 Hb_000152_480 Hb_000152_480 Hb_000175_050--Hb_000152_480 Hb_002075_030 Hb_002075_030 Hb_000175_050--Hb_002075_030 Hb_005489_090 Hb_005489_090 Hb_000175_050--Hb_005489_090 Hb_000032_140 Hb_000032_140 Hb_000175_050--Hb_000032_140 Hb_003948_020--Hb_002411_100 Hb_000045_050 Hb_000045_050 Hb_003948_020--Hb_000045_050 Hb_003948_020--Hb_010557_010 Hb_000061_250 Hb_000061_250 Hb_003948_020--Hb_000061_250 Hb_003948_020--Hb_000264_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.23257 7.65388 29.6708 9.23061 1.65602 1.19292
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.17972 8.58119 4.21544 2.02823 35.4543

CAGE analysis