Hb_007904_040

Information

Type -
Description -
Location Contig7904: 22903-28936
Sequence    

Annotation

kegg
ID rcu:RCOM_1082590
description prenyl-dependent CAAX protease, putative
nr
ID XP_012085567.1
description PREDICTED: uncharacterized protein LOC105644727 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JS23
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17884 PE=4 SV=1
Gene Ontology
ID GO:0016020
description prenyl-dependent caax

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58307: 19539-22400 , PASA_asmbl_58308: 23011-23335 , PASA_asmbl_58309: 23487-28877
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007904_040 0.0 - - PREDICTED: uncharacterized protein LOC105644727 [Jatropha curcas]
2 Hb_000175_050 0.0961021108 - - -
3 Hb_000032_140 0.1075370721 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001842_020 0.1206319536 - - PREDICTED: low molecular weight phosphotyrosine protein phosphatase [Jatropha curcas]
5 Hb_004672_020 0.1248861332 - - PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]
6 Hb_000032_400 0.1276103972 - - PREDICTED: UDP-glucose 4-epimerase GEPI48 [Jatropha curcas]
7 Hb_002783_150 0.1357167397 - - cyclophilin [Hevea brasiliensis]
8 Hb_001343_020 0.1365042102 - - ABC transporter family protein [Hevea brasiliensis]
9 Hb_000152_480 0.1407056388 - - PREDICTED: protein LOW PSII ACCUMULATION 2, chloroplastic [Jatropha curcas]
10 Hb_011053_030 0.1419066903 - - -
11 Hb_000388_060 0.148163073 - - fructokinase [Manihot esculenta]
12 Hb_008179_010 0.1503968886 transcription factor TF Family: ARF PREDICTED: auxin response factor 16 [Jatropha curcas]
13 Hb_005489_090 0.1509352176 - - PREDICTED: peptidyl-tRNA hydrolase ICT1, mitochondrial [Jatropha curcas]
14 Hb_001898_180 0.1535274938 - - PREDICTED: translation initiation factor IF-1, chloroplastic [Jatropha curcas]
15 Hb_027445_100 0.1535526768 - - PREDICTED: probable monodehydroascorbate reductase, cytoplasmic isoform 2 [Jatropha curcas]
16 Hb_000395_010 0.1543932424 - - alpha/beta hydrolase domain containing protein 1,3, putative [Ricinus communis]
17 Hb_001629_090 0.1549188593 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000368_120 0.1554284656 - - PREDICTED: uncharacterized protein LOC105633862 [Jatropha curcas]
19 Hb_000397_150 0.1556891787 - - PREDICTED: probable flavin-containing monooxygenase 1 [Jatropha curcas]
20 Hb_000983_070 0.1564263206 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_007904_040 Hb_007904_040 Hb_000175_050 Hb_000175_050 Hb_007904_040--Hb_000175_050 Hb_000032_140 Hb_000032_140 Hb_007904_040--Hb_000032_140 Hb_001842_020 Hb_001842_020 Hb_007904_040--Hb_001842_020 Hb_004672_020 Hb_004672_020 Hb_007904_040--Hb_004672_020 Hb_000032_400 Hb_000032_400 Hb_007904_040--Hb_000032_400 Hb_002783_150 Hb_002783_150 Hb_007904_040--Hb_002783_150 Hb_011053_030 Hb_011053_030 Hb_000175_050--Hb_011053_030 Hb_000152_480 Hb_000152_480 Hb_000175_050--Hb_000152_480 Hb_002075_030 Hb_002075_030 Hb_000175_050--Hb_002075_030 Hb_005489_090 Hb_005489_090 Hb_000175_050--Hb_005489_090 Hb_000175_050--Hb_000032_140 Hb_000042_290 Hb_000042_290 Hb_000032_140--Hb_000042_290 Hb_000991_020 Hb_000991_020 Hb_000032_140--Hb_000991_020 Hb_000032_140--Hb_001842_020 Hb_001124_180 Hb_001124_180 Hb_000032_140--Hb_001124_180 Hb_016219_030 Hb_016219_030 Hb_001842_020--Hb_016219_030 Hb_000560_040 Hb_000560_040 Hb_001842_020--Hb_000560_040 Hb_002759_120 Hb_002759_120 Hb_001842_020--Hb_002759_120 Hb_002053_010 Hb_002053_010 Hb_001842_020--Hb_002053_010 Hb_000388_060 Hb_000388_060 Hb_001842_020--Hb_000388_060 Hb_005305_020 Hb_005305_020 Hb_004672_020--Hb_005305_020 Hb_001307_100 Hb_001307_100 Hb_004672_020--Hb_001307_100 Hb_004041_030 Hb_004041_030 Hb_004672_020--Hb_004041_030 Hb_002150_020 Hb_002150_020 Hb_004672_020--Hb_002150_020 Hb_032631_070 Hb_032631_070 Hb_004672_020--Hb_032631_070 Hb_004672_020--Hb_000175_050 Hb_000032_400--Hb_011053_030 Hb_000189_520 Hb_000189_520 Hb_000032_400--Hb_000189_520 Hb_003941_030 Hb_003941_030 Hb_000032_400--Hb_003941_030 Hb_026314_030 Hb_026314_030 Hb_000032_400--Hb_026314_030 Hb_000684_280 Hb_000684_280 Hb_000032_400--Hb_000684_280 Hb_000032_400--Hb_000175_050 Hb_009615_180 Hb_009615_180 Hb_002783_150--Hb_009615_180 Hb_002783_150--Hb_000032_400 Hb_000500_050 Hb_000500_050 Hb_002783_150--Hb_000500_050 Hb_002783_150--Hb_004672_020 Hb_002085_080 Hb_002085_080 Hb_002783_150--Hb_002085_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.17864 5.19916 10.6153 7.55987 0.452859 0.951243
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.86866 5.97952 1.61274 3.32453 21.6567

CAGE analysis