Hb_000560_040

Information

Type -
Description -
Location Contig560: 65553-79036
Sequence    

Annotation

kegg
ID pop:POPTR_0016s10670g
description POPTRDRAFT_735580; Membrane-associated 30 kDa family protein
nr
ID XP_012065082.1
description PREDICTED: membrane-associated 30 kDa protein, chloroplastic [Jatropha curcas]
swissprot
ID Q03943
description Membrane-associated 30 kDa protein, chloroplastic OS=Pisum sativum GN=IM30 PE=2 SV=1
trembl
ID A0A067L7A7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05739 PE=4 SV=1
Gene Ontology
ID GO:0009508
description membrane-associated 30 kda chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48749: 65617-79106 , PASA_asmbl_48751: 75547-75749 , PASA_asmbl_48752: 75443-77931
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000560_040 0.0 - - PREDICTED: membrane-associated 30 kDa protein, chloroplastic [Jatropha curcas]
2 Hb_002529_090 0.0881898332 rubber biosynthesis Gene Name: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Hevea brasiliensis]
3 Hb_055690_010 0.103368095 - - PREDICTED: pheophytinase, chloroplastic [Jatropha curcas]
4 Hb_003440_020 0.10464309 - - PREDICTED: serine protease SPPA, chloroplastic isoform X2 [Jatropha curcas]
5 Hb_002075_030 0.1076295325 - - PREDICTED: glycerol-3-phosphate acyltransferase, chloroplastic [Jatropha curcas]
6 Hb_032631_070 0.1088431429 - - PREDICTED: lisH domain and HEAT repeat-containing protein KIAA1468 homolog isoform X1 [Jatropha curcas]
7 Hb_002053_010 0.1094864404 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic-like [Jatropha curcas]
8 Hb_000909_080 0.1117560732 - - PREDICTED: inosine-5'-monophosphate dehydrogenase 2-like [Jatropha curcas]
9 Hb_016219_030 0.1128843477 - - cytochrome P450, putative [Ricinus communis]
10 Hb_001619_060 0.1132484249 - - PREDICTED: uncharacterized methyltransferase At1g78140, chloroplastic [Jatropha curcas]
11 Hb_001789_200 0.1133707203 - - PREDICTED: sec-independent protein translocase protein TATB, chloroplastic [Jatropha curcas]
12 Hb_008375_010 0.1152973468 - - PREDICTED: carbon catabolite repressor protein 4 homolog 4 isoform X3 [Pyrus x bretschneideri]
13 Hb_005218_080 0.1153755037 - - PREDICTED: branched-chain-amino-acid aminotransferase 3, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_001322_230 0.1155986744 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic [Populus euphratica]
15 Hb_000599_210 0.1157478348 - - serine/threonine-protein kinase, putative [Ricinus communis]
16 Hb_007441_310 0.1164057288 - - PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Jatropha curcas]
17 Hb_000585_110 0.1174415917 - - PREDICTED: probable protein phosphatase 2C 66 [Jatropha curcas]
18 Hb_000358_020 0.1178667981 - - PREDICTED: uncharacterized protein C05D11.7-like [Jatropha curcas]
19 Hb_001842_020 0.1186634404 - - PREDICTED: low molecular weight phosphotyrosine protein phosphatase [Jatropha curcas]
20 Hb_000388_060 0.119543359 - - fructokinase [Manihot esculenta]

Gene co-expression network

sample Hb_000560_040 Hb_000560_040 Hb_002529_090 Hb_002529_090 Hb_000560_040--Hb_002529_090 Hb_055690_010 Hb_055690_010 Hb_000560_040--Hb_055690_010 Hb_003440_020 Hb_003440_020 Hb_000560_040--Hb_003440_020 Hb_002075_030 Hb_002075_030 Hb_000560_040--Hb_002075_030 Hb_032631_070 Hb_032631_070 Hb_000560_040--Hb_032631_070 Hb_002053_010 Hb_002053_010 Hb_000560_040--Hb_002053_010 Hb_000070_110 Hb_000070_110 Hb_002529_090--Hb_000070_110 Hb_002529_090--Hb_003440_020 Hb_004348_040 Hb_004348_040 Hb_002529_090--Hb_004348_040 Hb_000130_200 Hb_000130_200 Hb_002529_090--Hb_000130_200 Hb_002232_160 Hb_002232_160 Hb_002529_090--Hb_002232_160 Hb_000585_110 Hb_000585_110 Hb_055690_010--Hb_000585_110 Hb_030736_040 Hb_030736_040 Hb_055690_010--Hb_030736_040 Hb_000358_020 Hb_000358_020 Hb_055690_010--Hb_000358_020 Hb_002150_020 Hb_002150_020 Hb_055690_010--Hb_002150_020 Hb_008375_010 Hb_008375_010 Hb_055690_010--Hb_008375_010 Hb_005571_010 Hb_005571_010 Hb_055690_010--Hb_005571_010 Hb_003440_020--Hb_000358_020 Hb_000909_080 Hb_000909_080 Hb_003440_020--Hb_000909_080 Hb_005218_080 Hb_005218_080 Hb_003440_020--Hb_005218_080 Hb_003440_020--Hb_055690_010 Hb_000890_080 Hb_000890_080 Hb_003440_020--Hb_000890_080 Hb_106890_010 Hb_106890_010 Hb_003440_020--Hb_106890_010 Hb_002075_030--Hb_032631_070 Hb_001307_100 Hb_001307_100 Hb_002075_030--Hb_001307_100 Hb_000579_040 Hb_000579_040 Hb_002075_030--Hb_000579_040 Hb_007441_310 Hb_007441_310 Hb_002075_030--Hb_007441_310 Hb_003029_020 Hb_003029_020 Hb_002075_030--Hb_003029_020 Hb_010128_020 Hb_010128_020 Hb_002075_030--Hb_010128_020 Hb_032631_070--Hb_000579_040 Hb_032631_070--Hb_007441_310 Hb_032631_070--Hb_002150_020 Hb_138585_030 Hb_138585_030 Hb_032631_070--Hb_138585_030 Hb_032631_070--Hb_000585_110 Hb_001789_200 Hb_001789_200 Hb_002053_010--Hb_001789_200 Hb_008695_200 Hb_008695_200 Hb_002053_010--Hb_008695_200 Hb_016219_030 Hb_016219_030 Hb_002053_010--Hb_016219_030 Hb_001369_790 Hb_001369_790 Hb_002053_010--Hb_001369_790 Hb_004440_060 Hb_004440_060 Hb_002053_010--Hb_004440_060 Hb_000086_080 Hb_000086_080 Hb_002053_010--Hb_000086_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.48888 8.81523 20.8731 20.2524 3.27743 4.417
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.91114 14.5153 4.46352 13.1748 32.0397

CAGE analysis