Hb_000130_200

Information

Type -
Description -
Location Contig130: 173433-178831
Sequence    

Annotation

kegg
ID rcu:RCOM_1521280
description ATP binding protein, putative (EC:2.7.10.2)
nr
ID XP_012078568.1
description PREDICTED: putative serine/threonine-protein kinase isoform X3 [Jatropha curcas]
swissprot
ID C0LGH2
description Probable LRR receptor-like serine/threonine-protein kinase At1g56130 OS=Arabidopsis thaliana GN=At1g56130 PE=2 SV=2
trembl
ID A0A067K8F1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14724 PE=3 SV=1
Gene Ontology
ID GO:0000166
description serine threonine-protein kinase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08903: 173510-179059 , PASA_asmbl_08905: 173722-173943
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000130_200 0.0 - - PREDICTED: putative serine/threonine-protein kinase isoform X3 [Jatropha curcas]
2 Hb_000070_110 0.0731646389 - - PREDICTED: uncharacterized protein LOC105645744 isoform X1 [Jatropha curcas]
3 Hb_000622_060 0.0937552904 - - PREDICTED: uncharacterized protein At5g05190-like isoform X1 [Jatropha curcas]
4 Hb_178968_080 0.0978033162 - - PREDICTED: serine/threonine-protein kinase OSR1 isoform X2 [Jatropha curcas]
5 Hb_000032_600 0.1006393522 - - PREDICTED: B2 protein [Jatropha curcas]
6 Hb_033152_110 0.1010426222 transcription factor TF Family: G2-like PREDICTED: probable transcription factor KAN3 [Jatropha curcas]
7 Hb_002529_090 0.1080503773 rubber biosynthesis Gene Name: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Hevea brasiliensis]
8 Hb_000115_360 0.1206358257 - - PREDICTED: probable protein phosphatase 2C 15 isoform X3 [Jatropha curcas]
9 Hb_003226_200 0.1209509289 - - magnesium/proton exchanger, putative [Ricinus communis]
10 Hb_003778_020 0.12219629 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
11 Hb_000977_150 0.1298027553 - - latex cyanogenic beta glucosidase [Hevea brasiliensis]
12 Hb_000210_080 0.1318796368 - - PREDICTED: 2-Cys peroxiredoxin BAS1, chloroplastic-like [Jatropha curcas]
13 Hb_002811_190 0.1331107247 - - tRNA pseudouridine synthase d, putative [Ricinus communis]
14 Hb_000008_060 0.1388292518 - - protein binding protein, putative [Ricinus communis]
15 Hb_000890_080 0.1389244739 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 34-like [Populus euphratica]
16 Hb_001054_060 0.1449251883 - - PREDICTED: dihydropyrimidine dehydrogenase [NADP(+)] [Jatropha curcas]
17 Hb_002811_200 0.1454927474 - - PREDICTED: protein IQ-DOMAIN 14-like [Jatropha curcas]
18 Hb_067664_010 0.1461694793 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
19 Hb_012851_020 0.1480583095 - - PREDICTED: aminodeoxychorismate synthase, chloroplastic isoform X2 [Jatropha curcas]
20 Hb_005305_020 0.148515793 - - PREDICTED: dicarboxylate transporter 1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000130_200 Hb_000130_200 Hb_000070_110 Hb_000070_110 Hb_000130_200--Hb_000070_110 Hb_000622_060 Hb_000622_060 Hb_000130_200--Hb_000622_060 Hb_178968_080 Hb_178968_080 Hb_000130_200--Hb_178968_080 Hb_000032_600 Hb_000032_600 Hb_000130_200--Hb_000032_600 Hb_033152_110 Hb_033152_110 Hb_000130_200--Hb_033152_110 Hb_002529_090 Hb_002529_090 Hb_000130_200--Hb_002529_090 Hb_000070_110--Hb_002529_090 Hb_000070_110--Hb_178968_080 Hb_002232_160 Hb_002232_160 Hb_000070_110--Hb_002232_160 Hb_000070_110--Hb_000032_600 Hb_000890_080 Hb_000890_080 Hb_000070_110--Hb_000890_080 Hb_000115_360 Hb_000115_360 Hb_000622_060--Hb_000115_360 Hb_000622_060--Hb_033152_110 Hb_003226_200 Hb_003226_200 Hb_000622_060--Hb_003226_200 Hb_000622_060--Hb_000032_600 Hb_004129_010 Hb_004129_010 Hb_000622_060--Hb_004129_010 Hb_178968_080--Hb_000032_600 Hb_001040_150 Hb_001040_150 Hb_178968_080--Hb_001040_150 Hb_178968_080--Hb_000622_060 Hb_001054_060 Hb_001054_060 Hb_178968_080--Hb_001054_060 Hb_067664_010 Hb_067664_010 Hb_000032_600--Hb_067664_010 Hb_000032_600--Hb_001054_060 Hb_000977_150 Hb_000977_150 Hb_000032_600--Hb_000977_150 Hb_001754_120 Hb_001754_120 Hb_000032_600--Hb_001754_120 Hb_033152_110--Hb_000115_360 Hb_033152_110--Hb_003226_200 Hb_033152_110--Hb_001754_120 Hb_000046_480 Hb_000046_480 Hb_033152_110--Hb_000046_480 Hb_000560_040 Hb_000560_040 Hb_002529_090--Hb_000560_040 Hb_003440_020 Hb_003440_020 Hb_002529_090--Hb_003440_020 Hb_004348_040 Hb_004348_040 Hb_002529_090--Hb_004348_040 Hb_002529_090--Hb_002232_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.307772 1.6754 3.97222 3.75659 0.0868296 0.266405
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.975881 1.51228 1.6202 3.85157 8.33922

CAGE analysis