Hb_001040_150

Information

Type -
Description -
Location Contig1040: 201658-208170
Sequence    

Annotation

kegg
ID rcu:RCOM_0936080
description hypothetical protein
nr
ID XP_002519052.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RZ83
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0936080 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001040_150 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_006185_030 0.0945148571 - - threonine synthase, putative [Ricinus communis]
3 Hb_009803_020 0.0999324854 - - hypothetical protein PRUPE_ppa006317mg [Prunus persica]
4 Hb_098533_010 0.1159522712 - - hypothetical protein L484_003492 [Morus notabilis]
5 Hb_007229_050 0.1228395306 - - PREDICTED: palmitoyl-protein thioesterase 1 isoform X1 [Jatropha curcas]
6 Hb_178968_080 0.1228672691 - - PREDICTED: serine/threonine-protein kinase OSR1 isoform X2 [Jatropha curcas]
7 Hb_000625_030 0.1252180543 - - PREDICTED: calmodulin-lysine N-methyltransferase [Jatropha curcas]
8 Hb_000070_110 0.1263564973 - - PREDICTED: uncharacterized protein LOC105645744 isoform X1 [Jatropha curcas]
9 Hb_002232_160 0.127136396 - - Transaminase mtnE, putative [Ricinus communis]
10 Hb_000032_600 0.1334113577 - - PREDICTED: B2 protein [Jatropha curcas]
11 Hb_124315_010 0.1350865343 - - PREDICTED: uncharacterized protein LOC105650413 [Jatropha curcas]
12 Hb_033594_100 0.1391142312 transcription factor TF Family: GNAT PREDICTED: probable amino-acid acetyltransferase NAGS1, chloroplastic isoform X1 [Jatropha curcas]
13 Hb_002811_200 0.1447827685 - - PREDICTED: protein IQ-DOMAIN 14-like [Jatropha curcas]
14 Hb_006700_040 0.1450208682 - - PREDICTED: vacuolar-sorting receptor 6-like [Jatropha curcas]
15 Hb_000622_060 0.1501332189 - - PREDICTED: uncharacterized protein At5g05190-like isoform X1 [Jatropha curcas]
16 Hb_000172_280 0.1526724609 - - aspartate aminotransferase, putative [Ricinus communis]
17 Hb_000922_260 0.1530771734 - - PREDICTED: pantothenate kinase 2 [Jatropha curcas]
18 Hb_000453_240 0.1533638472 rubber biosynthesis Gene Name: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase [Hevea brasiliensis]
19 Hb_011853_010 0.1544285662 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 [Jatropha curcas]
20 Hb_000130_200 0.1547377096 - - PREDICTED: putative serine/threonine-protein kinase isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_001040_150 Hb_001040_150 Hb_006185_030 Hb_006185_030 Hb_001040_150--Hb_006185_030 Hb_009803_020 Hb_009803_020 Hb_001040_150--Hb_009803_020 Hb_098533_010 Hb_098533_010 Hb_001040_150--Hb_098533_010 Hb_007229_050 Hb_007229_050 Hb_001040_150--Hb_007229_050 Hb_178968_080 Hb_178968_080 Hb_001040_150--Hb_178968_080 Hb_000625_030 Hb_000625_030 Hb_001040_150--Hb_000625_030 Hb_006185_030--Hb_007229_050 Hb_006185_030--Hb_009803_020 Hb_001235_130 Hb_001235_130 Hb_006185_030--Hb_001235_130 Hb_006185_030--Hb_098533_010 Hb_011174_080 Hb_011174_080 Hb_006185_030--Hb_011174_080 Hb_009803_020--Hb_098533_010 Hb_009803_020--Hb_007229_050 Hb_000768_150 Hb_000768_150 Hb_009803_020--Hb_000768_150 Hb_000601_040 Hb_000601_040 Hb_009803_020--Hb_000601_040 Hb_098533_010--Hb_007229_050 Hb_007317_020 Hb_007317_020 Hb_098533_010--Hb_007317_020 Hb_001473_170 Hb_001473_170 Hb_098533_010--Hb_001473_170 Hb_009535_030 Hb_009535_030 Hb_098533_010--Hb_009535_030 Hb_004129_010 Hb_004129_010 Hb_007229_050--Hb_004129_010 Hb_007229_050--Hb_001235_130 Hb_000157_140 Hb_000157_140 Hb_007229_050--Hb_000157_140 Hb_000256_160 Hb_000256_160 Hb_007229_050--Hb_000256_160 Hb_000130_200 Hb_000130_200 Hb_178968_080--Hb_000130_200 Hb_000032_600 Hb_000032_600 Hb_178968_080--Hb_000032_600 Hb_000070_110 Hb_000070_110 Hb_178968_080--Hb_000070_110 Hb_000622_060 Hb_000622_060 Hb_178968_080--Hb_000622_060 Hb_001054_060 Hb_001054_060 Hb_178968_080--Hb_001054_060 Hb_008749_020 Hb_008749_020 Hb_000625_030--Hb_008749_020 Hb_004041_100 Hb_004041_100 Hb_000625_030--Hb_004041_100 Hb_000181_020 Hb_000181_020 Hb_000625_030--Hb_000181_020 Hb_001500_070 Hb_001500_070 Hb_000625_030--Hb_001500_070 Hb_000720_090 Hb_000720_090 Hb_000625_030--Hb_000720_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.254395 0.900801 1.7513 2.20157 0.0876685 0.219997
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.812085 0.456364 0.644593 3.83126 3.44599

CAGE analysis