Hb_009803_020

Information

Type -
Description -
Location Contig9803: 10074-14912
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa006317mg
description hypothetical protein
nr
ID XP_007199930.1
description hypothetical protein PRUPE_ppa006317mg [Prunus persica]
swissprot
ID A2XAZ3
description Alcohol dehydrogenase class-3 OS=Oryza sativa subsp. indica GN=ADHIII PE=3 SV=1
trembl
ID M5VJ61
description S-(hydroxymethyl)glutathione dehydrogenase OS=Prunus persica GN=PRUPE_ppa006317mg PE=3 SV=1
Gene Ontology
ID GO:0008270
description alcohol dehydrogenase class-3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64385: 10149-15044
cDNA
(Sanger)
(ID:Location)		 022_A10.ab1: 10225-13748

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009803_020 0.0 - - hypothetical protein PRUPE_ppa006317mg [Prunus persica]
2 Hb_098533_010 0.0874201116 - - hypothetical protein L484_003492 [Morus notabilis]
3 Hb_006185_030 0.0910427631 - - threonine synthase, putative [Ricinus communis]
4 Hb_001040_150 0.0999324854 - - conserved hypothetical protein [Ricinus communis]
5 Hb_007229_050 0.1055976403 - - PREDICTED: palmitoyl-protein thioesterase 1 isoform X1 [Jatropha curcas]
6 Hb_000768_150 0.1127000827 - - PREDICTED: glycine-rich protein A3-like [Fragaria vesca subsp. vesca]
7 Hb_000601_040 0.1177353079 - - PREDICTED: E3 ubiquitin-protein ligase BOI-like [Jatropha curcas]
8 Hb_010390_010 0.1178746662 - - casein kinase, putative [Ricinus communis]
9 Hb_012053_020 0.1209134534 - - PREDICTED: magnesium transporter MRS2-11, chloroplastic [Jatropha curcas]
10 Hb_004326_010 0.1240835728 - - cationic amino acid transporter, putative [Ricinus communis]
11 Hb_001473_170 0.1271047183 - - PREDICTED: non-lysosomal glucosylceramidase [Jatropha curcas]
12 Hb_000181_460 0.1271600662 - - cmp-2-keto-3-deoctulosonate (cmp-kdo) cytidyltransferase, putative [Ricinus communis]
13 Hb_000070_110 0.1271768759 - - PREDICTED: uncharacterized protein LOC105645744 isoform X1 [Jatropha curcas]
14 Hb_000997_320 0.1276636291 - - PREDICTED: acylamino-acid-releasing enzyme-like [Malus domestica]
15 Hb_036388_010 0.1296788114 - - PREDICTED: formate--tetrahydrofolate ligase [Populus euphratica]
16 Hb_000622_060 0.1317694304 - - PREDICTED: uncharacterized protein At5g05190-like isoform X1 [Jatropha curcas]
17 Hb_009535_030 0.1334142224 - - CP2 [Hevea brasiliensis]
18 Hb_000157_140 0.1362935564 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
19 Hb_030312_030 0.1379353715 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP40 isoform X1 [Jatropha curcas]
20 Hb_000032_600 0.1388118586 - - PREDICTED: B2 protein [Jatropha curcas]

Gene co-expression network

sample Hb_009803_020 Hb_009803_020 Hb_098533_010 Hb_098533_010 Hb_009803_020--Hb_098533_010 Hb_006185_030 Hb_006185_030 Hb_009803_020--Hb_006185_030 Hb_001040_150 Hb_001040_150 Hb_009803_020--Hb_001040_150 Hb_007229_050 Hb_007229_050 Hb_009803_020--Hb_007229_050 Hb_000768_150 Hb_000768_150 Hb_009803_020--Hb_000768_150 Hb_000601_040 Hb_000601_040 Hb_009803_020--Hb_000601_040 Hb_098533_010--Hb_007229_050 Hb_007317_020 Hb_007317_020 Hb_098533_010--Hb_007317_020 Hb_098533_010--Hb_006185_030 Hb_001473_170 Hb_001473_170 Hb_098533_010--Hb_001473_170 Hb_009535_030 Hb_009535_030 Hb_098533_010--Hb_009535_030 Hb_006185_030--Hb_007229_050 Hb_006185_030--Hb_001040_150 Hb_001235_130 Hb_001235_130 Hb_006185_030--Hb_001235_130 Hb_011174_080 Hb_011174_080 Hb_006185_030--Hb_011174_080 Hb_001040_150--Hb_098533_010 Hb_001040_150--Hb_007229_050 Hb_178968_080 Hb_178968_080 Hb_001040_150--Hb_178968_080 Hb_000625_030 Hb_000625_030 Hb_001040_150--Hb_000625_030 Hb_004129_010 Hb_004129_010 Hb_007229_050--Hb_004129_010 Hb_007229_050--Hb_001235_130 Hb_000157_140 Hb_000157_140 Hb_007229_050--Hb_000157_140 Hb_000256_160 Hb_000256_160 Hb_007229_050--Hb_000256_160 Hb_036388_010 Hb_036388_010 Hb_000768_150--Hb_036388_010 Hb_030312_030 Hb_030312_030 Hb_000768_150--Hb_030312_030 Hb_012053_020 Hb_012053_020 Hb_000768_150--Hb_012053_020 Hb_004326_010 Hb_004326_010 Hb_000768_150--Hb_004326_010 Hb_000997_320 Hb_000997_320 Hb_000768_150--Hb_000997_320 Hb_010390_010 Hb_010390_010 Hb_000601_040--Hb_010390_010 Hb_000601_040--Hb_001473_170 Hb_000601_040--Hb_098533_010 Hb_000601_040--Hb_006185_030 Hb_001951_060 Hb_001951_060 Hb_000601_040--Hb_001951_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.5888 63.3132 109.908 232.957 16.532 15.958
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
58.5262 31.0077 49.707 212.027 274.661

CAGE analysis