Hb_006185_030

Information

Type -
Description -
Location Contig6185: 55704-57287
Sequence    

Annotation

kegg
ID rcu:RCOM_0654720
description threonine synthase, putative (EC:4.2.3.1)
nr
ID XP_002521363.1
description threonine synthase, putative [Ricinus communis]
swissprot
ID Q9MT28
description Threonine synthase, chloroplastic OS=Solanum tuberosum PE=2 SV=1
trembl
ID B9S5U4
description Threonine synthase, putative OS=Ricinus communis GN=RCOM_0654720 PE=4 SV=1
Gene Ontology
ID GO:0009507
description threonine chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 052_L02.ab1: 57283-57512

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006185_030 0.0 - - threonine synthase, putative [Ricinus communis]
2 Hb_007229_050 0.076401068 - - PREDICTED: palmitoyl-protein thioesterase 1 isoform X1 [Jatropha curcas]
3 Hb_009803_020 0.0910427631 - - hypothetical protein PRUPE_ppa006317mg [Prunus persica]
4 Hb_001040_150 0.0945148571 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001235_130 0.097530656 - - -
6 Hb_098533_010 0.1058778863 - - hypothetical protein L484_003492 [Morus notabilis]
7 Hb_011174_080 0.1062911679 - - PREDICTED: sulfite oxidase [Jatropha curcas]
8 Hb_124315_010 0.1086560322 - - PREDICTED: uncharacterized protein LOC105650413 [Jatropha curcas]
9 Hb_000157_140 0.1176825452 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
10 Hb_002281_020 0.1222444756 - - PREDICTED: actin-related protein 8 [Jatropha curcas]
11 Hb_001473_170 0.1222737276 - - PREDICTED: non-lysosomal glucosylceramidase [Jatropha curcas]
12 Hb_010390_010 0.1236978924 - - casein kinase, putative [Ricinus communis]
13 Hb_009535_030 0.1244025448 - - CP2 [Hevea brasiliensis]
14 Hb_001951_060 0.1247661741 - - PREDICTED: UDP-N-acetylglucosamine transferase subunit ALG14 [Jatropha curcas]
15 Hb_000601_040 0.1254544849 - - PREDICTED: E3 ubiquitin-protein ligase BOI-like [Jatropha curcas]
16 Hb_000768_150 0.1269998349 - - PREDICTED: glycine-rich protein A3-like [Fragaria vesca subsp. vesca]
17 Hb_001405_080 0.1277599353 - - PREDICTED: acylamino-acid-releasing enzyme [Jatropha curcas]
18 Hb_004030_060 0.1282029317 - - receptor protein kinase zmpk1, putative [Ricinus communis]
19 Hb_004129_010 0.1292724393 - - aspartate aminotransferase, putative [Ricinus communis]
20 Hb_000622_060 0.1308351755 - - PREDICTED: uncharacterized protein At5g05190-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_006185_030 Hb_006185_030 Hb_007229_050 Hb_007229_050 Hb_006185_030--Hb_007229_050 Hb_009803_020 Hb_009803_020 Hb_006185_030--Hb_009803_020 Hb_001040_150 Hb_001040_150 Hb_006185_030--Hb_001040_150 Hb_001235_130 Hb_001235_130 Hb_006185_030--Hb_001235_130 Hb_098533_010 Hb_098533_010 Hb_006185_030--Hb_098533_010 Hb_011174_080 Hb_011174_080 Hb_006185_030--Hb_011174_080 Hb_004129_010 Hb_004129_010 Hb_007229_050--Hb_004129_010 Hb_007229_050--Hb_001235_130 Hb_007229_050--Hb_098533_010 Hb_000157_140 Hb_000157_140 Hb_007229_050--Hb_000157_140 Hb_000256_160 Hb_000256_160 Hb_007229_050--Hb_000256_160 Hb_009803_020--Hb_098533_010 Hb_009803_020--Hb_001040_150 Hb_009803_020--Hb_007229_050 Hb_000768_150 Hb_000768_150 Hb_009803_020--Hb_000768_150 Hb_000601_040 Hb_000601_040 Hb_009803_020--Hb_000601_040 Hb_001040_150--Hb_098533_010 Hb_001040_150--Hb_007229_050 Hb_178968_080 Hb_178968_080 Hb_001040_150--Hb_178968_080 Hb_000625_030 Hb_000625_030 Hb_001040_150--Hb_000625_030 Hb_001235_130--Hb_011174_080 Hb_001235_130--Hb_000256_160 Hb_005854_040 Hb_005854_040 Hb_001235_130--Hb_005854_040 Hb_005588_120 Hb_005588_120 Hb_001235_130--Hb_005588_120 Hb_009535_030 Hb_009535_030 Hb_001235_130--Hb_009535_030 Hb_007317_020 Hb_007317_020 Hb_098533_010--Hb_007317_020 Hb_001473_170 Hb_001473_170 Hb_098533_010--Hb_001473_170 Hb_098533_010--Hb_009535_030 Hb_011174_080--Hb_000157_140 Hb_002805_090 Hb_002805_090 Hb_011174_080--Hb_002805_090 Hb_011174_080--Hb_000256_160 Hb_029879_120 Hb_029879_120 Hb_011174_080--Hb_029879_120 Hb_001702_050 Hb_001702_050 Hb_011174_080--Hb_001702_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.37367 11.0976 14.3651 23.6448 0.90945 4.56588
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.98235 4.52394 4.82327 26.0728 29.6655

CAGE analysis