Hb_000768_150

Information

Type -
Description -
Location Contig768: 147530-150495
Sequence    

Annotation

kegg
ID fve:101298364
description uncharacterized protein LOC101298364
nr
ID XP_011469591.1
description PREDICTED: glycine-rich protein A3-like [Fragaria vesca subsp. vesca]
swissprot
ID P37705
description Glycine-rich protein A3 OS=Daucus carota PE=2 SV=1
trembl
ID M5X148
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011636mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57516: 147555-150621 , PASA_asmbl_57517: 147577-150621 , PASA_asmbl_57518: 147732-147967 , PASA_asmbl_57519: 148124-148566
cDNA
(Sanger)
(ID:Location)		 009_O08.ab1: 147585-150346 , 009_P21.ab1: 147579-150302 , 025_P03.ab1: 147615-150091 , 044_P08.ab1: 147579-150198 , 047_B24.ab1: 147579-150305 , 052_P12.ab1: 147555-150149

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000768_150 0.0 - - PREDICTED: glycine-rich protein A3-like [Fragaria vesca subsp. vesca]
2 Hb_036388_010 0.0915511405 - - PREDICTED: formate--tetrahydrofolate ligase [Populus euphratica]
3 Hb_030312_030 0.1117963255 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP40 isoform X1 [Jatropha curcas]
4 Hb_012053_020 0.1126432179 - - PREDICTED: magnesium transporter MRS2-11, chloroplastic [Jatropha curcas]
5 Hb_009803_020 0.1127000827 - - hypothetical protein PRUPE_ppa006317mg [Prunus persica]
6 Hb_004326_010 0.1138276155 - - cationic amino acid transporter, putative [Ricinus communis]
7 Hb_000997_320 0.1150985197 - - PREDICTED: acylamino-acid-releasing enzyme-like [Malus domestica]
8 Hb_006736_050 0.1193974707 - - hypothetical protein POPTR_0006s04450g [Populus trichocarpa]
9 Hb_000157_140 0.1229675208 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
10 Hb_003783_050 0.124138975 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000941_120 0.1257576092 - - hypothetical protein JCGZ_25565 [Jatropha curcas]
12 Hb_006185_030 0.1269998349 - - threonine synthase, putative [Ricinus communis]
13 Hb_035834_010 0.1303299503 - - zinc finger protein, putative [Ricinus communis]
14 Hb_002486_020 0.1350850358 - - ATP binding protein, putative [Ricinus communis]
15 Hb_000120_740 0.1361445211 desease resistance Gene Name: VARLMGL conserved hypothetical protein [Ricinus communis]
16 Hb_000622_060 0.1362064608 - - PREDICTED: uncharacterized protein At5g05190-like isoform X1 [Jatropha curcas]
17 Hb_000077_310 0.1367238739 - - PREDICTED: clathrin light chain 1 [Jatropha curcas]
18 Hb_004032_110 0.1389206396 - - PREDICTED: putative methylesterase 14, chloroplastic [Jatropha curcas]
19 Hb_001054_060 0.1390816354 - - PREDICTED: dihydropyrimidine dehydrogenase [NADP(+)] [Jatropha curcas]
20 Hb_001621_100 0.1396069886 - - PREDICTED: L-type lectin-domain containing receptor kinase S.4 [Jatropha curcas]

Gene co-expression network

sample Hb_000768_150 Hb_000768_150 Hb_036388_010 Hb_036388_010 Hb_000768_150--Hb_036388_010 Hb_030312_030 Hb_030312_030 Hb_000768_150--Hb_030312_030 Hb_012053_020 Hb_012053_020 Hb_000768_150--Hb_012053_020 Hb_009803_020 Hb_009803_020 Hb_000768_150--Hb_009803_020 Hb_004326_010 Hb_004326_010 Hb_000768_150--Hb_004326_010 Hb_000997_320 Hb_000997_320 Hb_000768_150--Hb_000997_320 Hb_035834_010 Hb_035834_010 Hb_036388_010--Hb_035834_010 Hb_003783_050 Hb_003783_050 Hb_036388_010--Hb_003783_050 Hb_036388_010--Hb_000997_320 Hb_006736_050 Hb_006736_050 Hb_036388_010--Hb_006736_050 Hb_000417_380 Hb_000417_380 Hb_036388_010--Hb_000417_380 Hb_001195_370 Hb_001195_370 Hb_030312_030--Hb_001195_370 Hb_030312_030--Hb_003783_050 Hb_001054_060 Hb_001054_060 Hb_030312_030--Hb_001054_060 Hb_000941_120 Hb_000941_120 Hb_030312_030--Hb_000941_120 Hb_003006_080 Hb_003006_080 Hb_030312_030--Hb_003006_080 Hb_002805_090 Hb_002805_090 Hb_030312_030--Hb_002805_090 Hb_007317_020 Hb_007317_020 Hb_012053_020--Hb_007317_020 Hb_007229_050 Hb_007229_050 Hb_012053_020--Hb_007229_050 Hb_098533_010 Hb_098533_010 Hb_012053_020--Hb_098533_010 Hb_012053_020--Hb_036388_010 Hb_012053_020--Hb_004326_010 Hb_009803_020--Hb_098533_010 Hb_006185_030 Hb_006185_030 Hb_009803_020--Hb_006185_030 Hb_001040_150 Hb_001040_150 Hb_009803_020--Hb_001040_150 Hb_009803_020--Hb_007229_050 Hb_000601_040 Hb_000601_040 Hb_009803_020--Hb_000601_040 Hb_007537_030 Hb_007537_030 Hb_004326_010--Hb_007537_030 Hb_000570_020 Hb_000570_020 Hb_004326_010--Hb_000570_020 Hb_000157_140 Hb_000157_140 Hb_004326_010--Hb_000157_140 Hb_000181_460 Hb_000181_460 Hb_004326_010--Hb_000181_460 Hb_000120_740 Hb_000120_740 Hb_004326_010--Hb_000120_740 Hb_001105_130 Hb_001105_130 Hb_004326_010--Hb_001105_130 Hb_000997_320--Hb_001195_370 Hb_000997_320--Hb_030312_030 Hb_000997_320--Hb_001054_060 Hb_000329_080 Hb_000329_080 Hb_000997_320--Hb_000329_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.03726 24.1181 61.2741 122.563 4.76477 14.7587
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.4596 17.4971 13.2051 68.4724 121.898

CAGE analysis