Hb_001195_370

Information

Type -
Description -
Location Contig1195: 217702-220422
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05822: 217682-221108 , PASA_asmbl_05823: 217682-221108
cDNA
(Sanger)
(ID:Location)		 001_K05.ab1: 220064-221032 , 003_D23.ab1: 220017-221032 , 003_L06.ab1: 220079-221032 , 007_I10.ab1: 220034-221034 , 033_G09.ab1: 219156-219825 , 038_A19.ab1: 220030-221034

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001195_370 0.0 - - -
2 Hb_030312_030 0.0905756527 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP40 isoform X1 [Jatropha curcas]
3 Hb_000997_290 0.0994463557 - - PREDICTED: acylamino-acid-releasing enzyme [Jatropha curcas]
4 Hb_000329_080 0.1050088576 - - PREDICTED: transketolase, chloroplastic [Jatropha curcas]
5 Hb_000997_320 0.1065701654 - - PREDICTED: acylamino-acid-releasing enzyme-like [Malus domestica]
6 Hb_000366_030 0.1067690397 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent)-like [Jatropha curcas]
7 Hb_001080_150 0.1068263166 - - PREDICTED: Niemann-Pick C1 protein-like [Jatropha curcas]
8 Hb_000977_150 0.1161066092 - - latex cyanogenic beta glucosidase [Hevea brasiliensis]
9 Hb_000066_040 0.1190284639 - - PREDICTED: CDPK-related kinase 7-like [Populus euphratica]
10 Hb_007933_030 0.1227674635 - - PREDICTED: uncharacterized protein LOC105639932 [Jatropha curcas]
11 Hb_001969_130 0.1232944037 - - PREDICTED: molybdate transporter 2 [Jatropha curcas]
12 Hb_001054_060 0.1253998536 - - PREDICTED: dihydropyrimidine dehydrogenase [NADP(+)] [Jatropha curcas]
13 Hb_000731_290 0.1257636692 - - ABC transporter family protein [Hevea brasiliensis]
14 Hb_003783_050 0.1284938061 - - conserved hypothetical protein [Ricinus communis]
15 Hb_008616_040 0.1289008885 - - PREDICTED: RNA-binding protein CP33, chloroplastic [Jatropha curcas]
16 Hb_002805_090 0.1289190489 - - Ran GTPase binding protein, putative [Ricinus communis]
17 Hb_005116_140 0.1291259348 - - PREDICTED: RAN GTPase-activating protein 1 [Jatropha curcas]
18 Hb_001109_160 0.1312024091 - - DNA binding protein, putative [Ricinus communis]
19 Hb_049293_010 0.1336890432 - - kinase, putative [Ricinus communis]
20 Hb_011174_080 0.1338025282 - - PREDICTED: sulfite oxidase [Jatropha curcas]

Gene co-expression network

sample Hb_001195_370 Hb_001195_370 Hb_030312_030 Hb_030312_030 Hb_001195_370--Hb_030312_030 Hb_000997_290 Hb_000997_290 Hb_001195_370--Hb_000997_290 Hb_000329_080 Hb_000329_080 Hb_001195_370--Hb_000329_080 Hb_000997_320 Hb_000997_320 Hb_001195_370--Hb_000997_320 Hb_000366_030 Hb_000366_030 Hb_001195_370--Hb_000366_030 Hb_001080_150 Hb_001080_150 Hb_001195_370--Hb_001080_150 Hb_003783_050 Hb_003783_050 Hb_030312_030--Hb_003783_050 Hb_001054_060 Hb_001054_060 Hb_030312_030--Hb_001054_060 Hb_000941_120 Hb_000941_120 Hb_030312_030--Hb_000941_120 Hb_003006_080 Hb_003006_080 Hb_030312_030--Hb_003006_080 Hb_002805_090 Hb_002805_090 Hb_030312_030--Hb_002805_090 Hb_009193_010 Hb_009193_010 Hb_000997_290--Hb_009193_010 Hb_000997_290--Hb_000329_080 Hb_000066_040 Hb_000066_040 Hb_000997_290--Hb_000066_040 Hb_001425_010 Hb_001425_010 Hb_000997_290--Hb_001425_010 Hb_011174_080 Hb_011174_080 Hb_000997_290--Hb_011174_080 Hb_001365_010 Hb_001365_010 Hb_000329_080--Hb_001365_010 Hb_000163_110 Hb_000163_110 Hb_000329_080--Hb_000163_110 Hb_000300_680 Hb_000300_680 Hb_000329_080--Hb_000300_680 Hb_001811_080 Hb_001811_080 Hb_000329_080--Hb_001811_080 Hb_000977_150 Hb_000977_150 Hb_000329_080--Hb_000977_150 Hb_036388_010 Hb_036388_010 Hb_000997_320--Hb_036388_010 Hb_000997_320--Hb_030312_030 Hb_000997_320--Hb_001054_060 Hb_000768_150 Hb_000768_150 Hb_000997_320--Hb_000768_150 Hb_000997_320--Hb_000329_080 Hb_000757_020 Hb_000757_020 Hb_000366_030--Hb_000757_020 Hb_001969_130 Hb_001969_130 Hb_000366_030--Hb_001969_130 Hb_049293_010 Hb_049293_010 Hb_000366_030--Hb_049293_010 Hb_000731_290 Hb_000731_290 Hb_000366_030--Hb_000731_290 Hb_000366_030--Hb_011174_080 Hb_062013_010 Hb_062013_010 Hb_001080_150--Hb_062013_010 Hb_001080_150--Hb_000329_080 Hb_007933_030 Hb_007933_030 Hb_001080_150--Hb_007933_030 Hb_000963_090 Hb_000963_090 Hb_001080_150--Hb_000963_090 Hb_078477_060 Hb_078477_060 Hb_001080_150--Hb_078477_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.8726 83.687 74.3267 152.217 19.2818 22.8226
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.828 14.4598 13.253 106.65 299.284

CAGE analysis