Hb_000163_110

Information

Type -
Description -
Location Contig163: 75383-78202
Sequence    

Annotation

kegg
ID rcu:RCOM_1178360
description DNA photolyase, putative (EC:4.1.99.3)
nr
ID XP_012082781.1
description PREDICTED: blue-light photoreceptor PHR2 [Jatropha curcas]
swissprot
ID Q8LB72
description Blue-light photoreceptor PHR2 OS=Arabidopsis thaliana GN=PHR2 PE=2 SV=2
trembl
ID A0A067K8P2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13940 PE=4 SV=1
Gene Ontology
ID GO:0003904
description blue-light photoreceptor phr2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14809: 75522-78216
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000163_110 0.0 - - PREDICTED: blue-light photoreceptor PHR2 [Jatropha curcas]
2 Hb_000329_080 0.094427362 - - PREDICTED: transketolase, chloroplastic [Jatropha curcas]
3 Hb_001365_020 0.1006418092 - - hypothetical protein PRUPE_ppa000927mg [Prunus persica]
4 Hb_001365_010 0.1059668492 - - hypothetical protein JCGZ_02762 [Jatropha curcas]
5 Hb_000441_050 0.1070106416 - - PREDICTED: 187-kDa microtubule-associated protein AIR9 [Jatropha curcas]
6 Hb_005977_060 0.1147846869 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000300_680 0.1176492138 - - PREDICTED: uncharacterized protein LOC105632625 isoform X1 [Jatropha curcas]
8 Hb_001811_080 0.1180975194 - - PREDICTED: fructose-1,6-bisphosphatase, cytosolic [Jatropha curcas]
9 Hb_003053_070 0.1181877222 - - PREDICTED: phosphoglucan phosphatase LSF1, chloroplastic [Jatropha curcas]
10 Hb_002811_190 0.1185891796 - - tRNA pseudouridine synthase d, putative [Ricinus communis]
11 Hb_010632_010 0.123902379 - - PREDICTED: bifunctional dethiobiotin synthetase/7,8-diamino-pelargonic acid aminotransferase, mitochondrial [Jatropha curcas]
12 Hb_005276_070 0.1259196556 - - PREDICTED: RAN GTPase-activating protein 1 [Jatropha curcas]
13 Hb_000975_050 0.1288004491 - - PREDICTED: inner membrane protein PPF-1, chloroplastic [Jatropha curcas]
14 Hb_010632_020 0.1374991204 - - hypothetical protein POPTR_0006s185902g, partial [Populus trichocarpa]
15 Hb_000997_290 0.1383081973 - - PREDICTED: acylamino-acid-releasing enzyme [Jatropha curcas]
16 Hb_000997_320 0.1401474733 - - PREDICTED: acylamino-acid-releasing enzyme-like [Malus domestica]
17 Hb_000963_090 0.1402482667 rubber biosynthesis Gene Name: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase [Hevea brasiliensis]
18 Hb_008616_040 0.1451135188 - - PREDICTED: RNA-binding protein CP33, chloroplastic [Jatropha curcas]
19 Hb_004242_170 0.1452059589 - - calcium/calmodulin-regulated receptor-like kinase [Manihot esculenta]
20 Hb_000210_080 0.145861398 - - PREDICTED: 2-Cys peroxiredoxin BAS1, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_000163_110 Hb_000163_110 Hb_000329_080 Hb_000329_080 Hb_000163_110--Hb_000329_080 Hb_001365_020 Hb_001365_020 Hb_000163_110--Hb_001365_020 Hb_001365_010 Hb_001365_010 Hb_000163_110--Hb_001365_010 Hb_000441_050 Hb_000441_050 Hb_000163_110--Hb_000441_050 Hb_005977_060 Hb_005977_060 Hb_000163_110--Hb_005977_060 Hb_000300_680 Hb_000300_680 Hb_000163_110--Hb_000300_680 Hb_000329_080--Hb_001365_010 Hb_001195_370 Hb_001195_370 Hb_000329_080--Hb_001195_370 Hb_000329_080--Hb_000300_680 Hb_001811_080 Hb_001811_080 Hb_000329_080--Hb_001811_080 Hb_000977_150 Hb_000977_150 Hb_000329_080--Hb_000977_150 Hb_001365_020--Hb_001365_010 Hb_001365_020--Hb_000441_050 Hb_003053_070 Hb_003053_070 Hb_001365_020--Hb_003053_070 Hb_001365_020--Hb_005977_060 Hb_005276_070 Hb_005276_070 Hb_001365_020--Hb_005276_070 Hb_001365_010--Hb_000441_050 Hb_003783_050 Hb_003783_050 Hb_001365_010--Hb_003783_050 Hb_035834_010 Hb_035834_010 Hb_001365_010--Hb_035834_010 Hb_000441_050--Hb_005977_060 Hb_004242_170 Hb_004242_170 Hb_000441_050--Hb_004242_170 Hb_001053_020 Hb_001053_020 Hb_000441_050--Hb_001053_020 Hb_002374_450 Hb_002374_450 Hb_000441_050--Hb_002374_450 Hb_000441_050--Hb_005276_070 Hb_005977_060--Hb_005276_070 Hb_005977_060--Hb_004242_170 Hb_009692_040 Hb_009692_040 Hb_005977_060--Hb_009692_040 Hb_005977_060--Hb_001053_020 Hb_000616_030 Hb_000616_030 Hb_000300_680--Hb_000616_030 Hb_031330_020 Hb_031330_020 Hb_000300_680--Hb_031330_020 Hb_001916_150 Hb_001916_150 Hb_000300_680--Hb_001916_150 Hb_000975_050 Hb_000975_050 Hb_000300_680--Hb_000975_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.3913 18.1573 89.0037 70.5461 7.62412 10.1863
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.7923 9.77239 12.2694 71.8557 212.509

CAGE analysis