Hb_000616_030

Information

Type -
Description -
Location Contig616: 29021-31213
Sequence    

Annotation

kegg
ID rcu:RCOM_0338880
description transcription factor, putative
nr
ID XP_012079481.1
description PREDICTED: dentin sialophosphoprotein [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KJY7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12595 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51223: 28319-29572 , PASA_asmbl_51224: 29824-31250
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000616_030 0.0 - - PREDICTED: dentin sialophosphoprotein [Jatropha curcas]
2 Hb_000300_680 0.0872239224 - - PREDICTED: uncharacterized protein LOC105632625 isoform X1 [Jatropha curcas]
3 Hb_001124_230 0.1044313321 - - PREDICTED: divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic [Jatropha curcas]
4 Hb_000441_050 0.1277489163 - - PREDICTED: 187-kDa microtubule-associated protein AIR9 [Jatropha curcas]
5 Hb_000612_090 0.1308508595 - - PREDICTED: mitochondrial carnitine/acylcarnitine carrier-like protein [Jatropha curcas]
6 Hb_005977_060 0.1336887139 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000975_050 0.1352013761 - - PREDICTED: inner membrane protein PPF-1, chloroplastic [Jatropha curcas]
8 Hb_031330_020 0.1378300101 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
9 Hb_002028_180 0.1396547882 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
10 Hb_004242_170 0.1397301928 - - calcium/calmodulin-regulated receptor-like kinase [Manihot esculenta]
11 Hb_002235_110 0.1430302258 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
12 Hb_002817_040 0.1449268978 - - PREDICTED: kinesin-II 85 kDa subunit isoform X1 [Jatropha curcas]
13 Hb_000805_010 0.1453239928 - - PREDICTED: uncharacterized protein LOC105629931 [Jatropha curcas]
14 Hb_000005_370 0.14653949 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105634024 [Jatropha curcas]
15 Hb_010620_030 0.15441929 - - beta-amyrin synthase [Euphorbia tirucalli]
16 Hb_004712_200 0.1547495696 - - hypothetical protein CICLE_v10010292mg [Citrus clementina]
17 Hb_001365_010 0.1558301862 - - hypothetical protein JCGZ_02762 [Jatropha curcas]
18 Hb_007933_030 0.1560709048 - - PREDICTED: uncharacterized protein LOC105639932 [Jatropha curcas]
19 Hb_003849_070 0.1561090546 - - PREDICTED: uncharacterized protein LOC105644690 [Jatropha curcas]
20 Hb_000329_080 0.1571780085 - - PREDICTED: transketolase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000616_030 Hb_000616_030 Hb_000300_680 Hb_000300_680 Hb_000616_030--Hb_000300_680 Hb_001124_230 Hb_001124_230 Hb_000616_030--Hb_001124_230 Hb_000441_050 Hb_000441_050 Hb_000616_030--Hb_000441_050 Hb_000612_090 Hb_000612_090 Hb_000616_030--Hb_000612_090 Hb_005977_060 Hb_005977_060 Hb_000616_030--Hb_005977_060 Hb_000975_050 Hb_000975_050 Hb_000616_030--Hb_000975_050 Hb_031330_020 Hb_031330_020 Hb_000300_680--Hb_031330_020 Hb_000329_080 Hb_000329_080 Hb_000300_680--Hb_000329_080 Hb_001916_150 Hb_001916_150 Hb_000300_680--Hb_001916_150 Hb_000163_110 Hb_000163_110 Hb_000300_680--Hb_000163_110 Hb_000300_680--Hb_000975_050 Hb_000005_370 Hb_000005_370 Hb_001124_230--Hb_000005_370 Hb_001124_230--Hb_000612_090 Hb_008112_020 Hb_008112_020 Hb_001124_230--Hb_008112_020 Hb_001124_230--Hb_000300_680 Hb_000684_400 Hb_000684_400 Hb_001124_230--Hb_000684_400 Hb_000441_050--Hb_005977_060 Hb_004242_170 Hb_004242_170 Hb_000441_050--Hb_004242_170 Hb_001053_020 Hb_001053_020 Hb_000441_050--Hb_001053_020 Hb_001365_020 Hb_001365_020 Hb_000441_050--Hb_001365_020 Hb_002374_450 Hb_002374_450 Hb_000441_050--Hb_002374_450 Hb_005276_070 Hb_005276_070 Hb_000441_050--Hb_005276_070 Hb_002662_110 Hb_002662_110 Hb_000612_090--Hb_002662_110 Hb_074197_030 Hb_074197_030 Hb_000612_090--Hb_074197_030 Hb_002235_110 Hb_002235_110 Hb_000612_090--Hb_002235_110 Hb_000612_090--Hb_000441_050 Hb_002817_040 Hb_002817_040 Hb_000612_090--Hb_002817_040 Hb_000612_090--Hb_005977_060 Hb_005977_060--Hb_005276_070 Hb_005977_060--Hb_004242_170 Hb_009692_040 Hb_009692_040 Hb_005977_060--Hb_009692_040 Hb_005977_060--Hb_001365_020 Hb_005977_060--Hb_001053_020 Hb_000966_040 Hb_000966_040 Hb_000975_050--Hb_000966_040 Hb_010098_040 Hb_010098_040 Hb_000975_050--Hb_010098_040 Hb_000834_080 Hb_000834_080 Hb_000975_050--Hb_000834_080 Hb_000975_050--Hb_000441_050 Hb_005181_120 Hb_005181_120 Hb_000975_050--Hb_005181_120 Hb_000975_050--Hb_005977_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.27915 2.28033 15.2841 27.3783 3.62361 2.66973
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.59011 1.78054 3.87225 8.64011 57.6767

CAGE analysis