Hb_008112_020

Information

Type -
Description -
Location Contig8112: 30303-40011
Sequence    

Annotation

kegg
ID cic:CICLE_v10028468mg
description hypothetical protein
nr
ID XP_012076163.1
description PREDICTED: magnesium transporter MRS2-11, chloroplastic [Jatropha curcas]
swissprot
ID Q058N4
description Magnesium transporter MRS2-11, chloroplastic OS=Arabidopsis thaliana GN=MRS2-11 PE=2 SV=1
trembl
ID A0A067KDP6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11229 PE=4 SV=1
Gene Ontology
ID GO:0009941
description magnesium transporter mrs2- chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59253: 30254-39923 , PASA_asmbl_59254: 30782-39923
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008112_020 0.0 - - PREDICTED: magnesium transporter MRS2-11, chloroplastic [Jatropha curcas]
2 Hb_006472_040 0.0618044682 - - PREDICTED: inner membrane protein PPF-1, chloroplastic [Jatropha curcas]
3 Hb_001195_290 0.0856775042 - - PREDICTED: uncharacterized protein LOC105633792 [Jatropha curcas]
4 Hb_022693_010 0.0916802363 - - pectin acetylesterase, putative [Ricinus communis]
5 Hb_004979_050 0.0960655143 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
6 Hb_000679_320 0.0967888424 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105136146 [Populus euphratica]
7 Hb_169383_010 0.1120881347 - - PREDICTED: phosphoglycolate phosphatase 1B, chloroplastic [Jatropha curcas]
8 Hb_000590_110 0.1154810297 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000227_100 0.1157383315 - - PREDICTED: uncharacterized protein LOC105631933 [Jatropha curcas]
10 Hb_003090_240 0.1196725718 - - hypothetical protein JCGZ_25095 [Jatropha curcas]
11 Hb_002042_210 0.1205224624 - - PREDICTED: UPF0603 protein At1g54780, chloroplastic [Jatropha curcas]
12 Hb_001124_230 0.1215582942 - - PREDICTED: divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic [Jatropha curcas]
13 Hb_000317_180 0.1228105074 - - PREDICTED: protein THYLAKOID FORMATION1, chloroplastic [Jatropha curcas]
14 Hb_000847_030 0.125059283 - - PREDICTED: asparagine--tRNA ligase, cytoplasmic 2 [Jatropha curcas]
15 Hb_009393_140 0.1259120864 - - PREDICTED: uncharacterized protein LOC105638053 isoform X1 [Jatropha curcas]
16 Hb_001517_010 0.1265108626 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001691_180 0.12654839 - - phosphoglycerate mutase, putative [Ricinus communis]
18 Hb_003018_150 0.1287658496 - - PREDICTED: uncharacterized protein LOC105628869 [Jatropha curcas]
19 Hb_004128_170 0.1287993105 - - hypothetical protein POPTR_0016s08350g [Populus trichocarpa]
20 Hb_004586_270 0.129559484 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 2 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_008112_020 Hb_008112_020 Hb_006472_040 Hb_006472_040 Hb_008112_020--Hb_006472_040 Hb_001195_290 Hb_001195_290 Hb_008112_020--Hb_001195_290 Hb_022693_010 Hb_022693_010 Hb_008112_020--Hb_022693_010 Hb_004979_050 Hb_004979_050 Hb_008112_020--Hb_004979_050 Hb_000679_320 Hb_000679_320 Hb_008112_020--Hb_000679_320 Hb_169383_010 Hb_169383_010 Hb_008112_020--Hb_169383_010 Hb_006472_040--Hb_001195_290 Hb_006472_040--Hb_000679_320 Hb_006472_040--Hb_169383_010 Hb_000317_180 Hb_000317_180 Hb_006472_040--Hb_000317_180 Hb_009393_140 Hb_009393_140 Hb_006472_040--Hb_009393_140 Hb_001517_010 Hb_001517_010 Hb_001195_290--Hb_001517_010 Hb_005210_010 Hb_005210_010 Hb_001195_290--Hb_005210_010 Hb_001268_170 Hb_001268_170 Hb_001195_290--Hb_001268_170 Hb_134949_010 Hb_134949_010 Hb_001195_290--Hb_134949_010 Hb_000235_040 Hb_000235_040 Hb_022693_010--Hb_000235_040 Hb_004052_030 Hb_004052_030 Hb_022693_010--Hb_004052_030 Hb_000847_030 Hb_000847_030 Hb_022693_010--Hb_000847_030 Hb_022693_010--Hb_006472_040 Hb_001210_060 Hb_001210_060 Hb_022693_010--Hb_001210_060 Hb_004979_050--Hb_000679_320 Hb_000359_160 Hb_000359_160 Hb_004979_050--Hb_000359_160 Hb_001266_160 Hb_001266_160 Hb_004979_050--Hb_001266_160 Hb_004979_050--Hb_001517_010 Hb_004979_050--Hb_006472_040 Hb_000679_320--Hb_009393_140 Hb_000679_320--Hb_000359_160 Hb_000107_540 Hb_000107_540 Hb_000679_320--Hb_000107_540 Hb_004096_210 Hb_004096_210 Hb_169383_010--Hb_004096_210 Hb_169383_010--Hb_001195_290 Hb_019654_180 Hb_019654_180 Hb_169383_010--Hb_019654_180 Hb_000618_110 Hb_000618_110 Hb_169383_010--Hb_000618_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.762672 3.12542 30.097 33.0907 0.786235 0.860066
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.39768 2.11636 2.03764 2.71973 90.2765

CAGE analysis