Hb_022693_010

Information

Type -
Description -
Location Contig22693: 20235-23580
Sequence    

Annotation

kegg
ID rcu:RCOM_0867170
description pectin acetylesterase, putative
nr
ID XP_002519912.1
description pectin acetylesterase, putative [Ricinus communis]
swissprot
ID Q9FH82
description Pectin acetylesterase 11 OS=Arabidopsis thaliana GN=PAE11 PE=2 SV=1
trembl
ID B9S1P7
description Pectin acetylesterase, putative OS=Ricinus communis GN=RCOM_0867170 PE=4 SV=1
Gene Ontology
ID GO:0005576
description pectinacetylesterase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23539: 20255-23572 , PASA_asmbl_23540: 20326-23568 , PASA_asmbl_23541: 21289-21621
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_022693_010 0.0 - - pectin acetylesterase, putative [Ricinus communis]
2 Hb_000235_040 0.0892056272 - - PREDICTED: probable receptor-like serine/threonine-protein kinase At5g57670 isoform X1 [Populus euphratica]
3 Hb_008112_020 0.0916802363 - - PREDICTED: magnesium transporter MRS2-11, chloroplastic [Jatropha curcas]
4 Hb_004052_030 0.1006870722 - - PREDICTED: uncharacterized protein LOC105640637 [Jatropha curcas]
5 Hb_000847_030 0.1040269614 - - PREDICTED: asparagine--tRNA ligase, cytoplasmic 2 [Jatropha curcas]
6 Hb_006472_040 0.1084494214 - - PREDICTED: inner membrane protein PPF-1, chloroplastic [Jatropha curcas]
7 Hb_001210_060 0.1085450305 - - PREDICTED: pleiotropic drug resistance protein 1-like [Jatropha curcas]
8 Hb_000984_160 0.1099051512 - - PREDICTED: amino acid permease 6-like isoform X1 [Jatropha curcas]
9 Hb_002025_070 0.1113239995 - - PREDICTED: pentatricopeptide repeat-containing protein At5g13770, chloroplastic-like isoform X1 [Populus euphratica]
10 Hb_044478_010 0.1120196672 - - plastoquinol-plastocyanin reductase, putative [Ricinus communis]
11 Hb_000618_110 0.1166215542 - - hypothetical protein POPTR_0003s09870g [Populus trichocarpa]
12 Hb_004096_210 0.1175081309 - - PREDICTED: uncharacterized protein LOC105638707 isoform X2 [Jatropha curcas]
13 Hb_006970_030 0.1182816792 - - synaptotagmin, putative [Ricinus communis]
14 Hb_003018_150 0.1200054971 - - PREDICTED: uncharacterized protein LOC105628869 [Jatropha curcas]
15 Hb_005694_120 0.1217536175 - - PREDICTED: calcium-transporting ATPase, endoplasmic reticulum-type [Jatropha curcas]
16 Hb_000590_110 0.123192108 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001538_080 0.1234507446 - - PREDICTED: QWRF motif-containing protein 2 isoform X2 [Jatropha curcas]
18 Hb_002042_210 0.1246613783 - - PREDICTED: UPF0603 protein At1g54780, chloroplastic [Jatropha curcas]
19 Hb_022137_050 0.1258722192 - - PREDICTED: BAG family molecular chaperone regulator 1-like [Jatropha curcas]
20 Hb_000041_250 0.126921344 - - PREDICTED: uncharacterized protein LOC105641253 [Jatropha curcas]

Gene co-expression network

sample Hb_022693_010 Hb_022693_010 Hb_000235_040 Hb_000235_040 Hb_022693_010--Hb_000235_040 Hb_008112_020 Hb_008112_020 Hb_022693_010--Hb_008112_020 Hb_004052_030 Hb_004052_030 Hb_022693_010--Hb_004052_030 Hb_000847_030 Hb_000847_030 Hb_022693_010--Hb_000847_030 Hb_006472_040 Hb_006472_040 Hb_022693_010--Hb_006472_040 Hb_001210_060 Hb_001210_060 Hb_022693_010--Hb_001210_060 Hb_000235_040--Hb_001210_060 Hb_002025_070 Hb_002025_070 Hb_000235_040--Hb_002025_070 Hb_000076_060 Hb_000076_060 Hb_000235_040--Hb_000076_060 Hb_027472_060 Hb_027472_060 Hb_000235_040--Hb_027472_060 Hb_001538_080 Hb_001538_080 Hb_000235_040--Hb_001538_080 Hb_008112_020--Hb_006472_040 Hb_001195_290 Hb_001195_290 Hb_008112_020--Hb_001195_290 Hb_004979_050 Hb_004979_050 Hb_008112_020--Hb_004979_050 Hb_000679_320 Hb_000679_320 Hb_008112_020--Hb_000679_320 Hb_169383_010 Hb_169383_010 Hb_008112_020--Hb_169383_010 Hb_000984_160 Hb_000984_160 Hb_004052_030--Hb_000984_160 Hb_044478_010 Hb_044478_010 Hb_004052_030--Hb_044478_010 Hb_003358_030 Hb_003358_030 Hb_004052_030--Hb_003358_030 Hb_005111_040 Hb_005111_040 Hb_004052_030--Hb_005111_040 Hb_005569_010 Hb_005569_010 Hb_004052_030--Hb_005569_010 Hb_000482_180 Hb_000482_180 Hb_004052_030--Hb_000482_180 Hb_005694_120 Hb_005694_120 Hb_000847_030--Hb_005694_120 Hb_003018_150 Hb_003018_150 Hb_000847_030--Hb_003018_150 Hb_000618_110 Hb_000618_110 Hb_000847_030--Hb_000618_110 Hb_000847_030--Hb_000984_160 Hb_001946_120 Hb_001946_120 Hb_000847_030--Hb_001946_120 Hb_000847_030--Hb_001210_060 Hb_006472_040--Hb_001195_290 Hb_006472_040--Hb_000679_320 Hb_006472_040--Hb_169383_010 Hb_000317_180 Hb_000317_180 Hb_006472_040--Hb_000317_180 Hb_009393_140 Hb_009393_140 Hb_006472_040--Hb_009393_140 Hb_001210_060--Hb_003018_150 Hb_002246_030 Hb_002246_030 Hb_001210_060--Hb_002246_030 Hb_000329_440 Hb_000329_440 Hb_001210_060--Hb_000329_440 Hb_001210_060--Hb_027472_060 Hb_000103_130 Hb_000103_130 Hb_001210_060--Hb_000103_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.09638 36.3257 339.325 355.42 1.96457 0.574707
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.50892 14.803 17.9096 62.0647 798.824

CAGE analysis