Hb_009393_140

Information

Type -
Description -
Location Contig9393: 111029-112594
Sequence    

Annotation

kegg
ID rcu:RCOM_0708170
description hypothetical protein
nr
ID XP_012077158.1
description PREDICTED: uncharacterized protein LOC105638053 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KQ96
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07570 PE=4 SV=1
Gene Ontology
ID GO:0009507
description PREDICTED: uncharacterized protein LOC105638053 isoform X1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63056: 90930-112655
cDNA
(Sanger)
(ID:Location)		 040_L06.ab1: 111051-112655

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009393_140 0.0 - - PREDICTED: uncharacterized protein LOC105638053 isoform X1 [Jatropha curcas]
2 Hb_000679_320 0.0820235702 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105136146 [Populus euphratica]
3 Hb_000252_180 0.0871870967 - - Glutamate--glyoxylate aminotransferase 2 [Morus notabilis]
4 Hb_006472_040 0.1063067837 - - PREDICTED: inner membrane protein PPF-1, chloroplastic [Jatropha curcas]
5 Hb_000359_160 0.1072004866 - - PREDICTED: protein CAJ1 [Jatropha curcas]
6 Hb_004979_050 0.1142676546 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
7 Hb_022693_020 0.1222243763 - - pectin acetylesterase, putative [Ricinus communis]
8 Hb_001266_160 0.1229346239 - - PREDICTED: pheophytinase, chloroplastic [Jatropha curcas]
9 Hb_000723_320 0.1250303304 - - PREDICTED: putative cyclic nucleotide-gated ion channel 15 [Jatropha curcas]
10 Hb_008112_020 0.1259120864 - - PREDICTED: magnesium transporter MRS2-11, chloroplastic [Jatropha curcas]
11 Hb_000107_540 0.1261635999 - - PREDICTED: uncharacterized protein LOC105635335 [Jatropha curcas]
12 Hb_001691_180 0.1287446603 - - phosphoglycerate mutase, putative [Ricinus communis]
13 Hb_006915_010 0.1362670141 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
14 Hb_022137_050 0.1367728121 - - PREDICTED: BAG family molecular chaperone regulator 1-like [Jatropha curcas]
15 Hb_002814_010 0.1388276451 - - PREDICTED: adenylate kinase 5, chloroplastic [Jatropha curcas]
16 Hb_001517_010 0.140278988 - - conserved hypothetical protein [Ricinus communis]
17 Hb_163950_040 0.1407016973 - - PREDICTED: putative 4-hydroxy-tetrahydrodipicolinate reductase 3, chloroplastic [Jatropha curcas]
18 Hb_001195_290 0.1409053007 - - PREDICTED: uncharacterized protein LOC105633792 [Jatropha curcas]
19 Hb_000684_400 0.1423795854 - - PREDICTED: uncharacterized protein LOC105642159 [Jatropha curcas]
20 Hb_000359_070 0.1429532058 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 2, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_009393_140 Hb_009393_140 Hb_000679_320 Hb_000679_320 Hb_009393_140--Hb_000679_320 Hb_000252_180 Hb_000252_180 Hb_009393_140--Hb_000252_180 Hb_006472_040 Hb_006472_040 Hb_009393_140--Hb_006472_040 Hb_000359_160 Hb_000359_160 Hb_009393_140--Hb_000359_160 Hb_004979_050 Hb_004979_050 Hb_009393_140--Hb_004979_050 Hb_022693_020 Hb_022693_020 Hb_009393_140--Hb_022693_020 Hb_000679_320--Hb_004979_050 Hb_000679_320--Hb_006472_040 Hb_000679_320--Hb_000359_160 Hb_000107_540 Hb_000107_540 Hb_000679_320--Hb_000107_540 Hb_008112_020 Hb_008112_020 Hb_000679_320--Hb_008112_020 Hb_000252_180--Hb_000679_320 Hb_006915_010 Hb_006915_010 Hb_000252_180--Hb_006915_010 Hb_000638_100 Hb_000638_100 Hb_000252_180--Hb_000638_100 Hb_001691_180 Hb_001691_180 Hb_000252_180--Hb_001691_180 Hb_000252_180--Hb_000359_160 Hb_006472_040--Hb_008112_020 Hb_001195_290 Hb_001195_290 Hb_006472_040--Hb_001195_290 Hb_169383_010 Hb_169383_010 Hb_006472_040--Hb_169383_010 Hb_000317_180 Hb_000317_180 Hb_006472_040--Hb_000317_180 Hb_000359_160--Hb_004979_050 Hb_000723_320 Hb_000723_320 Hb_000359_160--Hb_000723_320 Hb_000359_070 Hb_000359_070 Hb_000359_160--Hb_000359_070 Hb_002814_010 Hb_002814_010 Hb_000359_160--Hb_002814_010 Hb_004979_050--Hb_008112_020 Hb_001266_160 Hb_001266_160 Hb_004979_050--Hb_001266_160 Hb_001517_010 Hb_001517_010 Hb_004979_050--Hb_001517_010 Hb_004979_050--Hb_006472_040 Hb_022693_020--Hb_000679_320 Hb_003018_150 Hb_003018_150 Hb_022693_020--Hb_003018_150 Hb_022693_020--Hb_000359_160 Hb_001541_280 Hb_001541_280 Hb_022693_020--Hb_001541_280 Hb_020141_030 Hb_020141_030 Hb_022693_020--Hb_020141_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.172469 1.43752 7.85906 8.18251 0.335102 0.332744
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.65659 0.906079 0.305889 2.52581 29.5203

CAGE analysis