Hb_000252_180

Information

Type -
Description -
Location Contig252: 147756-153907
Sequence    

Annotation

kegg
ID vvi:100261274
description AlaT1
nr
ID XP_010100388.1
description Glutamate--glyoxylate aminotransferase 2 [Morus notabilis]
swissprot
ID Q9S7E9
description Glutamate--glyoxylate aminotransferase 2 OS=Arabidopsis thaliana GN=GGAT2 PE=1 SV=1
trembl
ID W9RCI8
description Glutamate--glyoxylate aminotransferase 2 OS=Morus notabilis GN=L484_027698 PE=4 SV=1
Gene Ontology
ID GO:0003824
description glutamate--glyoxylate aminotransferase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26366: 150947-151156 , PASA_asmbl_26367: 147883-153886
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000252_180 0.0 - - Glutamate--glyoxylate aminotransferase 2 [Morus notabilis]
2 Hb_009393_140 0.0871870967 - - PREDICTED: uncharacterized protein LOC105638053 isoform X1 [Jatropha curcas]
3 Hb_000679_320 0.1189296237 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105136146 [Populus euphratica]
4 Hb_006915_010 0.1305418962 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
5 Hb_000638_100 0.1313936505 - - PREDICTED: histone deacetylase 14 [Jatropha curcas]
6 Hb_001691_180 0.1343557027 - - phosphoglycerate mutase, putative [Ricinus communis]
7 Hb_000359_160 0.1391881683 - - PREDICTED: protein CAJ1 [Jatropha curcas]
8 Hb_031330_020 0.1423153858 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
9 Hb_004979_050 0.1455266216 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
10 Hb_006472_040 0.1464307035 - - PREDICTED: inner membrane protein PPF-1, chloroplastic [Jatropha curcas]
11 Hb_001266_160 0.1509095075 - - PREDICTED: pheophytinase, chloroplastic [Jatropha curcas]
12 Hb_000107_540 0.1516358225 - - PREDICTED: uncharacterized protein LOC105635335 [Jatropha curcas]
13 Hb_028960_010 0.1528135028 - - phosphoglycerate kinase, putative [Ricinus communis]
14 Hb_163950_040 0.1546546451 - - PREDICTED: putative 4-hydroxy-tetrahydrodipicolinate reductase 3, chloroplastic [Jatropha curcas]
15 Hb_000359_070 0.1562972128 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 2, chloroplastic [Jatropha curcas]
16 Hb_000041_250 0.1567124601 - - PREDICTED: uncharacterized protein LOC105641253 [Jatropha curcas]
17 Hb_001517_010 0.1573036586 - - conserved hypothetical protein [Ricinus communis]
18 Hb_004724_260 0.1605516102 - - PREDICTED: 40S ribosomal protein S14-2-like [Gossypium raimondii]
19 Hb_022693_020 0.1609090228 - - pectin acetylesterase, putative [Ricinus communis]
20 Hb_134949_010 0.1610191602 - - PREDICTED: uncharacterized protein LOC105629574 [Jatropha curcas]

Gene co-expression network

sample Hb_000252_180 Hb_000252_180 Hb_009393_140 Hb_009393_140 Hb_000252_180--Hb_009393_140 Hb_000679_320 Hb_000679_320 Hb_000252_180--Hb_000679_320 Hb_006915_010 Hb_006915_010 Hb_000252_180--Hb_006915_010 Hb_000638_100 Hb_000638_100 Hb_000252_180--Hb_000638_100 Hb_001691_180 Hb_001691_180 Hb_000252_180--Hb_001691_180 Hb_000359_160 Hb_000359_160 Hb_000252_180--Hb_000359_160 Hb_009393_140--Hb_000679_320 Hb_006472_040 Hb_006472_040 Hb_009393_140--Hb_006472_040 Hb_009393_140--Hb_000359_160 Hb_004979_050 Hb_004979_050 Hb_009393_140--Hb_004979_050 Hb_022693_020 Hb_022693_020 Hb_009393_140--Hb_022693_020 Hb_000679_320--Hb_004979_050 Hb_000679_320--Hb_006472_040 Hb_000679_320--Hb_000359_160 Hb_000107_540 Hb_000107_540 Hb_000679_320--Hb_000107_540 Hb_008112_020 Hb_008112_020 Hb_000679_320--Hb_008112_020 Hb_006915_010--Hb_000638_100 Hb_000041_250 Hb_000041_250 Hb_006915_010--Hb_000041_250 Hb_004162_250 Hb_004162_250 Hb_006915_010--Hb_004162_250 Hb_006915_010--Hb_000107_540 Hb_006915_010--Hb_000679_320 Hb_001541_280 Hb_001541_280 Hb_006915_010--Hb_001541_280 Hb_004724_260 Hb_004724_260 Hb_000638_100--Hb_004724_260 Hb_000638_100--Hb_000041_250 Hb_004052_030 Hb_004052_030 Hb_000638_100--Hb_004052_030 Hb_002943_020 Hb_002943_020 Hb_000638_100--Hb_002943_020 Hb_002122_070 Hb_002122_070 Hb_000638_100--Hb_002122_070 Hb_000076_070 Hb_000076_070 Hb_001691_180--Hb_000076_070 Hb_001517_010 Hb_001517_010 Hb_001691_180--Hb_001517_010 Hb_123689_010 Hb_123689_010 Hb_001691_180--Hb_123689_010 Hb_009771_080 Hb_009771_080 Hb_001691_180--Hb_009771_080 Hb_001691_180--Hb_000107_540 Hb_028960_010 Hb_028960_010 Hb_001691_180--Hb_028960_010 Hb_000359_160--Hb_004979_050 Hb_000723_320 Hb_000723_320 Hb_000359_160--Hb_000723_320 Hb_000359_070 Hb_000359_070 Hb_000359_160--Hb_000359_070 Hb_002814_010 Hb_002814_010 Hb_000359_160--Hb_002814_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0951393 3.36609 17.7848 16.909 0.135456 0.476076
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.21961 1.93822 2.92601 7.70467 71.511

CAGE analysis