Hb_000638_100

Information

Type -
Description -
Location Contig638: 87334-102255
Sequence    

Annotation

kegg
ID rcu:RCOM_1187430
description Histone deacetylase, putative
nr
ID XP_012070591.1
description PREDICTED: histone deacetylase 14 [Jatropha curcas]
swissprot
ID Q941D6
description Histone deacetylase 14 OS=Arabidopsis thaliana GN=HDA14 PE=2 SV=1
trembl
ID A0A067L5M2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03691 PE=4 SV=1
Gene Ontology
ID GO:0005829
description histone deacetylase 14 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52013: 87548-102309
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000638_100 0.0 - - PREDICTED: histone deacetylase 14 [Jatropha curcas]
2 Hb_006915_010 0.0590721118 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
3 Hb_004724_260 0.0706335637 - - PREDICTED: 40S ribosomal protein S14-2-like [Gossypium raimondii]
4 Hb_000041_250 0.08565776 - - PREDICTED: uncharacterized protein LOC105641253 [Jatropha curcas]
5 Hb_004052_030 0.1197041629 - - PREDICTED: uncharacterized protein LOC105640637 [Jatropha curcas]
6 Hb_002943_020 0.1203786497 - - hypothetical protein POPTR_0075s00240g, partial [Populus trichocarpa]
7 Hb_002122_070 0.1208638283 - - unnamed protein product [Vitis vinifera]
8 Hb_001541_280 0.1224473168 - - phosphate transporter [Manihot esculenta]
9 Hb_000033_010 0.1226327352 - - Protein MLO, putative [Ricinus communis]
10 Hb_001300_240 0.122673133 - - shikimate dehydrogenase, putative [Ricinus communis]
11 Hb_004162_250 0.1305423322 - - hypothetical protein POPTR_0004s22660g [Populus trichocarpa]
12 Hb_000092_060 0.1310061817 - - PREDICTED: uncharacterized protein LOC105646505 [Jatropha curcas]
13 Hb_000252_180 0.1313936505 - - Glutamate--glyoxylate aminotransferase 2 [Morus notabilis]
14 Hb_114893_010 0.1322762629 - - Flavonol 4'-sulfotransferase, putative [Ricinus communis]
15 Hb_000705_040 0.1327291714 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000679_320 0.1331449627 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105136146 [Populus euphratica]
17 Hb_022693_010 0.1331809572 - - pectin acetylesterase, putative [Ricinus communis]
18 Hb_000675_010 0.1333897025 - - PREDICTED: cytokinin dehydrogenase 7 [Jatropha curcas]
19 Hb_016924_010 0.1340007035 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001652_130 0.1349165221 - - hypothetical protein B456_002G193900 [Gossypium raimondii]

Gene co-expression network

sample Hb_000638_100 Hb_000638_100 Hb_006915_010 Hb_006915_010 Hb_000638_100--Hb_006915_010 Hb_004724_260 Hb_004724_260 Hb_000638_100--Hb_004724_260 Hb_000041_250 Hb_000041_250 Hb_000638_100--Hb_000041_250 Hb_004052_030 Hb_004052_030 Hb_000638_100--Hb_004052_030 Hb_002943_020 Hb_002943_020 Hb_000638_100--Hb_002943_020 Hb_002122_070 Hb_002122_070 Hb_000638_100--Hb_002122_070 Hb_006915_010--Hb_000041_250 Hb_004162_250 Hb_004162_250 Hb_006915_010--Hb_004162_250 Hb_000107_540 Hb_000107_540 Hb_006915_010--Hb_000107_540 Hb_000679_320 Hb_000679_320 Hb_006915_010--Hb_000679_320 Hb_001541_280 Hb_001541_280 Hb_006915_010--Hb_001541_280 Hb_000033_010 Hb_000033_010 Hb_004724_260--Hb_000033_010 Hb_004724_260--Hb_006915_010 Hb_006198_040 Hb_006198_040 Hb_004724_260--Hb_006198_040 Hb_004724_260--Hb_002122_070 Hb_001652_130 Hb_001652_130 Hb_004724_260--Hb_001652_130 Hb_005348_120 Hb_005348_120 Hb_000041_250--Hb_005348_120 Hb_000041_250--Hb_004162_250 Hb_000675_010 Hb_000675_010 Hb_000041_250--Hb_000675_010 Hb_000041_250--Hb_000107_540 Hb_000984_160 Hb_000984_160 Hb_004052_030--Hb_000984_160 Hb_044478_010 Hb_044478_010 Hb_004052_030--Hb_044478_010 Hb_003358_030 Hb_003358_030 Hb_004052_030--Hb_003358_030 Hb_005111_040 Hb_005111_040 Hb_004052_030--Hb_005111_040 Hb_005569_010 Hb_005569_010 Hb_004052_030--Hb_005569_010 Hb_000482_180 Hb_000482_180 Hb_004052_030--Hb_000482_180 Hb_000705_040 Hb_000705_040 Hb_002943_020--Hb_000705_040 Hb_002943_020--Hb_000675_010 Hb_000270_640 Hb_000270_640 Hb_002943_020--Hb_000270_640 Hb_004979_070 Hb_004979_070 Hb_002943_020--Hb_004979_070 Hb_002073_150 Hb_002073_150 Hb_002943_020--Hb_002073_150 Hb_007904_110 Hb_007904_110 Hb_002943_020--Hb_007904_110 Hb_039435_020 Hb_039435_020 Hb_002122_070--Hb_039435_020 Hb_114893_010 Hb_114893_010 Hb_002122_070--Hb_114893_010 Hb_006053_020 Hb_006053_020 Hb_002122_070--Hb_006053_020 Hb_185474_020 Hb_185474_020 Hb_002122_070--Hb_185474_020 Hb_001300_240 Hb_001300_240 Hb_002122_070--Hb_001300_240 Hb_002122_070--Hb_000675_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0125613 3.68561 15.0833 13.05 0.0352875 0.128191
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.42893 0.292469 1.18685 6.92572 46.0307

CAGE analysis