Hb_000675_010

Information

Type -
Description -
Location Contig675: 10601-12796
Sequence    

Annotation

kegg
ID rcu:RCOM_0707270
description gulonolactone oxidase, putative (EC:1.5.99.12)
nr
ID XP_012077200.1
description PREDICTED: cytokinin dehydrogenase 7 [Jatropha curcas]
swissprot
ID Q9FUJ1
description Cytokinin dehydrogenase 7 OS=Arabidopsis thaliana GN=CKX7 PE=1 SV=1
trembl
ID A0A067KD15
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07603 PE=4 SV=1
Gene Ontology
ID GO:0008762
description cytokinin dehydrogenase 7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53524: 9089-12831
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000675_010 0.0 - - PREDICTED: cytokinin dehydrogenase 7 [Jatropha curcas]
2 Hb_000041_210 0.0673263093 - - PREDICTED: cysteine-rich receptor-like protein kinase 42 [Jatropha curcas]
3 Hb_012389_010 0.068716788 - - hypothetical protein POPTR_0018s11820g [Populus trichocarpa]
4 Hb_002943_020 0.0834997753 - - hypothetical protein POPTR_0075s00240g, partial [Populus trichocarpa]
5 Hb_002073_150 0.0846105182 transcription factor TF Family: MYB-related PREDICTED: transcription factor MYB1R1 [Jatropha curcas]
6 Hb_000483_430 0.0882283548 - - -
7 Hb_131876_010 0.092128414 transcription factor TF Family: MYB PREDICTED: myb-related protein 308-like isoform X1 [Jatropha curcas]
8 Hb_011104_020 0.0980443762 - - PREDICTED: ABC transporter B family member 2-like [Jatropha curcas]
9 Hb_067558_010 0.0995285111 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
10 Hb_069696_020 0.1027749374 - - PREDICTED: protochlorophyllide-dependent translocon component 52, chloroplastic-like isoform X2 [Jatropha curcas]
11 Hb_008143_010 0.102789125 - - PREDICTED: wall-associated receptor kinase-like 22 [Jatropha curcas]
12 Hb_002122_070 0.1062050541 - - unnamed protein product [Vitis vinifera]
13 Hb_001300_240 0.1065899412 - - shikimate dehydrogenase, putative [Ricinus communis]
14 Hb_000041_250 0.1066258074 - - PREDICTED: uncharacterized protein LOC105641253 [Jatropha curcas]
15 Hb_006970_120 0.1067113279 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000984_160 0.1068006237 - - PREDICTED: amino acid permease 6-like isoform X1 [Jatropha curcas]
17 Hb_000705_040 0.109662091 - - conserved hypothetical protein [Ricinus communis]
18 Hb_006053_020 0.1100047929 - - CAP [Theobroma cacao]
19 Hb_004946_010 0.1112146098 - - hypothetical protein POPTR_0013s035502g, partial [Populus trichocarpa]
20 Hb_039435_020 0.1112752253 - - Lysosomal Pro-X carboxypeptidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000675_010 Hb_000675_010 Hb_000041_210 Hb_000041_210 Hb_000675_010--Hb_000041_210 Hb_012389_010 Hb_012389_010 Hb_000675_010--Hb_012389_010 Hb_002943_020 Hb_002943_020 Hb_000675_010--Hb_002943_020 Hb_002073_150 Hb_002073_150 Hb_000675_010--Hb_002073_150 Hb_000483_430 Hb_000483_430 Hb_000675_010--Hb_000483_430 Hb_131876_010 Hb_131876_010 Hb_000675_010--Hb_131876_010 Hb_000041_210--Hb_012389_010 Hb_067558_010 Hb_067558_010 Hb_000041_210--Hb_067558_010 Hb_000041_210--Hb_131876_010 Hb_000239_050 Hb_000239_050 Hb_000041_210--Hb_000239_050 Hb_000041_210--Hb_000483_430 Hb_012389_010--Hb_002073_150 Hb_004994_030 Hb_004994_030 Hb_012389_010--Hb_004994_030 Hb_011104_020 Hb_011104_020 Hb_012389_010--Hb_011104_020 Hb_012389_010--Hb_131876_010 Hb_000705_040 Hb_000705_040 Hb_002943_020--Hb_000705_040 Hb_000270_640 Hb_000270_640 Hb_002943_020--Hb_000270_640 Hb_004979_070 Hb_004979_070 Hb_002943_020--Hb_004979_070 Hb_002943_020--Hb_002073_150 Hb_007904_110 Hb_007904_110 Hb_002943_020--Hb_007904_110 Hb_002073_150--Hb_011104_020 Hb_001248_070 Hb_001248_070 Hb_002073_150--Hb_001248_070 Hb_002073_150--Hb_131876_010 Hb_002073_150--Hb_000483_430 Hb_069696_020 Hb_069696_020 Hb_002073_150--Hb_069696_020 Hb_000483_430--Hb_011104_020 Hb_000483_430--Hb_012389_010 Hb_000483_430--Hb_004994_030 Hb_000023_130 Hb_000023_130 Hb_000483_430--Hb_000023_130 Hb_131876_010--Hb_069696_020 Hb_000984_160 Hb_000984_160 Hb_131876_010--Hb_000984_160 Hb_000627_050 Hb_000627_050 Hb_131876_010--Hb_000627_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0167553 1.01058 6.49485 3.6327 0 0.0173737
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.0349 12.3609

CAGE analysis