Hb_131876_010

Information

Type transcription factor
Description TF Family: MYB
Location Contig131876: 10218-11652
Sequence    

Annotation

kegg
ID pvu:PHAVU_009G158200g
description hypothetical protein
nr
ID XP_012089895.1
description PREDICTED: myb-related protein 308-like isoform X1 [Jatropha curcas]
swissprot
ID P81393
description Myb-related protein 308 OS=Antirrhinum majus GN=MYB308 PE=2 SV=1
trembl
ID A0A067JT70
description MYB family protein OS=Jatropha curcas GN=JCGZ_02792 PE=4 SV=1
Gene Ontology
ID GO:0005488
description transcription repressor myb6-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09247: 10284-10543
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_131876_010 0.0 transcription factor TF Family: MYB PREDICTED: myb-related protein 308-like isoform X1 [Jatropha curcas]
2 Hb_002073_150 0.0634512462 transcription factor TF Family: MYB-related PREDICTED: transcription factor MYB1R1 [Jatropha curcas]
3 Hb_069696_020 0.0674286731 - - PREDICTED: protochlorophyllide-dependent translocon component 52, chloroplastic-like isoform X2 [Jatropha curcas]
4 Hb_012389_010 0.0684814825 - - hypothetical protein POPTR_0018s11820g [Populus trichocarpa]
5 Hb_000984_160 0.0692518747 - - PREDICTED: amino acid permease 6-like isoform X1 [Jatropha curcas]
6 Hb_000041_210 0.0711728196 - - PREDICTED: cysteine-rich receptor-like protein kinase 42 [Jatropha curcas]
7 Hb_000627_050 0.0790808258 - - PREDICTED: uncharacterized protein LOC105632845 [Jatropha curcas]
8 Hb_001248_070 0.0827267044 - - PREDICTED: probable polyamine transporter At3g19553 [Jatropha curcas]
9 Hb_005569_010 0.0879084509 - - Heme-binding protein, putative [Ricinus communis]
10 Hb_000703_120 0.0917334029 - - PREDICTED: uncharacterized protein LOC105635706 isoform X1 [Jatropha curcas]
11 Hb_000675_010 0.092128414 - - PREDICTED: cytokinin dehydrogenase 7 [Jatropha curcas]
12 Hb_009788_020 0.0970658441 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g06840 [Jatropha curcas]
13 Hb_000076_060 0.0991567657 - - hypothetical protein RCOM_0586940 [Ricinus communis]
14 Hb_000212_410 0.1002623654 - - PREDICTED: serine carboxypeptidase 1-like [Jatropha curcas]
15 Hb_067558_010 0.1006205406 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
16 Hb_004946_010 0.1028330948 - - hypothetical protein POPTR_0013s035502g, partial [Populus trichocarpa]
17 Hb_060253_010 0.1029900787 - - hypothetical protein JCGZ_14707 [Jatropha curcas]
18 Hb_000483_430 0.1034412917 - - -
19 Hb_000140_460 0.1047243993 - - PREDICTED: uncharacterized protein LOC105628417 [Jatropha curcas]
20 Hb_000705_040 0.1048495881 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_131876_010 Hb_131876_010 Hb_002073_150 Hb_002073_150 Hb_131876_010--Hb_002073_150 Hb_069696_020 Hb_069696_020 Hb_131876_010--Hb_069696_020 Hb_012389_010 Hb_012389_010 Hb_131876_010--Hb_012389_010 Hb_000984_160 Hb_000984_160 Hb_131876_010--Hb_000984_160 Hb_000041_210 Hb_000041_210 Hb_131876_010--Hb_000041_210 Hb_000627_050 Hb_000627_050 Hb_131876_010--Hb_000627_050 Hb_011104_020 Hb_011104_020 Hb_002073_150--Hb_011104_020 Hb_002073_150--Hb_012389_010 Hb_001248_070 Hb_001248_070 Hb_002073_150--Hb_001248_070 Hb_000483_430 Hb_000483_430 Hb_002073_150--Hb_000483_430 Hb_002073_150--Hb_069696_020 Hb_069696_020--Hb_000627_050 Hb_069696_020--Hb_000984_160 Hb_000140_460 Hb_000140_460 Hb_069696_020--Hb_000140_460 Hb_030827_010 Hb_030827_010 Hb_069696_020--Hb_030827_010 Hb_012389_010--Hb_000041_210 Hb_004994_030 Hb_004994_030 Hb_012389_010--Hb_004994_030 Hb_012389_010--Hb_011104_020 Hb_000675_010 Hb_000675_010 Hb_012389_010--Hb_000675_010 Hb_005569_010 Hb_005569_010 Hb_000984_160--Hb_005569_010 Hb_004052_030 Hb_004052_030 Hb_000984_160--Hb_004052_030 Hb_001946_120 Hb_001946_120 Hb_000984_160--Hb_001946_120 Hb_000847_030 Hb_000847_030 Hb_000984_160--Hb_000847_030 Hb_067558_010 Hb_067558_010 Hb_000041_210--Hb_067558_010 Hb_000041_210--Hb_000675_010 Hb_000239_050 Hb_000239_050 Hb_000041_210--Hb_000239_050 Hb_000041_210--Hb_000483_430 Hb_000212_410 Hb_000212_410 Hb_000627_050--Hb_000212_410 Hb_000703_120 Hb_000703_120 Hb_000627_050--Hb_000703_120 Hb_009788_020 Hb_009788_020 Hb_000627_050--Hb_009788_020 Hb_007270_020 Hb_007270_020 Hb_000627_050--Hb_007270_020 Hb_000977_020 Hb_000977_020 Hb_000627_050--Hb_000977_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.89916 17.2078 13.8477 0.0173624 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.127031 0 0 4.35263 27.9291

CAGE analysis