Hb_000140_460

Information

Type -
Description -
Location Contig140: 458971-467226
Sequence    

Annotation

kegg
ID pop:POPTR_0017s05480g
description hypothetical protein
nr
ID XP_012065214.1
description PREDICTED: uncharacterized protein LOC105628417 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LH35
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20900 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10882: 459087-466897 , PASA_asmbl_10883: 459087-467496 , PASA_asmbl_10884: 460203-460653 , PASA_asmbl_10885: 460792-461002
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000140_460 0.0 - - PREDICTED: uncharacterized protein LOC105628417 [Jatropha curcas]
2 Hb_069696_020 0.0757314428 - - PREDICTED: protochlorophyllide-dependent translocon component 52, chloroplastic-like isoform X2 [Jatropha curcas]
3 Hb_002073_150 0.0775846501 transcription factor TF Family: MYB-related PREDICTED: transcription factor MYB1R1 [Jatropha curcas]
4 Hb_006970_030 0.0780087122 - - synaptotagmin, putative [Ricinus communis]
5 Hb_000618_110 0.0813035698 - - hypothetical protein POPTR_0003s09870g [Populus trichocarpa]
6 Hb_000984_160 0.0817714853 - - PREDICTED: amino acid permease 6-like isoform X1 [Jatropha curcas]
7 Hb_018591_020 0.0824625286 - - Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplast precursor, putative [Ricinus communis]
8 Hb_001051_010 0.0835746606 - - PREDICTED: putative cyclic nucleotide-gated ion channel 15 [Jatropha curcas]
9 Hb_000847_030 0.0847468052 - - PREDICTED: asparagine--tRNA ligase, cytoplasmic 2 [Jatropha curcas]
10 Hb_000608_290 0.0856001539 - - thioredoxin f-type, putative [Ricinus communis]
11 Hb_001248_070 0.0892502142 - - PREDICTED: probable polyamine transporter At3g19553 [Jatropha curcas]
12 Hb_012389_010 0.0895189075 - - hypothetical protein POPTR_0018s11820g [Populus trichocarpa]
13 Hb_004994_030 0.0923689305 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 [Jatropha curcas]
14 Hb_011104_020 0.0931850892 - - PREDICTED: ABC transporter B family member 2-like [Jatropha curcas]
15 Hb_001321_010 0.0943596467 - - HIGH-CHLOROPHYLL-FLUORESCENCE 101 family protein [Populus trichocarpa]
16 Hb_033363_040 0.0962800436 - - PREDICTED: probable galacturonosyltransferase-like 3 [Jatropha curcas]
17 Hb_007718_030 0.0983528346 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
18 Hb_000270_640 0.0992730112 - - hypothetical protein POPTR_0012s07880g [Populus trichocarpa]
19 Hb_005694_120 0.0998562782 - - PREDICTED: calcium-transporting ATPase, endoplasmic reticulum-type [Jatropha curcas]
20 Hb_001946_120 0.0999782094 - - PREDICTED: SPX domain-containing protein 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000140_460 Hb_000140_460 Hb_069696_020 Hb_069696_020 Hb_000140_460--Hb_069696_020 Hb_002073_150 Hb_002073_150 Hb_000140_460--Hb_002073_150 Hb_006970_030 Hb_006970_030 Hb_000140_460--Hb_006970_030 Hb_000618_110 Hb_000618_110 Hb_000140_460--Hb_000618_110 Hb_000984_160 Hb_000984_160 Hb_000140_460--Hb_000984_160 Hb_018591_020 Hb_018591_020 Hb_000140_460--Hb_018591_020 Hb_131876_010 Hb_131876_010 Hb_069696_020--Hb_131876_010 Hb_069696_020--Hb_002073_150 Hb_000627_050 Hb_000627_050 Hb_069696_020--Hb_000627_050 Hb_069696_020--Hb_000984_160 Hb_030827_010 Hb_030827_010 Hb_069696_020--Hb_030827_010 Hb_011104_020 Hb_011104_020 Hb_002073_150--Hb_011104_020 Hb_012389_010 Hb_012389_010 Hb_002073_150--Hb_012389_010 Hb_001248_070 Hb_001248_070 Hb_002073_150--Hb_001248_070 Hb_002073_150--Hb_131876_010 Hb_000483_430 Hb_000483_430 Hb_002073_150--Hb_000483_430 Hb_153258_040 Hb_153258_040 Hb_006970_030--Hb_153258_040 Hb_003777_080 Hb_003777_080 Hb_006970_030--Hb_003777_080 Hb_004970_060 Hb_004970_060 Hb_006970_030--Hb_004970_060 Hb_000950_020 Hb_000950_020 Hb_006970_030--Hb_000950_020 Hb_000049_100 Hb_000049_100 Hb_006970_030--Hb_000049_100 Hb_004096_210 Hb_004096_210 Hb_000618_110--Hb_004096_210 Hb_000847_030 Hb_000847_030 Hb_000618_110--Hb_000847_030 Hb_000618_110--Hb_006970_030 Hb_000866_020 Hb_000866_020 Hb_000618_110--Hb_000866_020 Hb_009393_130 Hb_009393_130 Hb_000618_110--Hb_009393_130 Hb_005569_010 Hb_005569_010 Hb_000984_160--Hb_005569_010 Hb_000984_160--Hb_131876_010 Hb_004052_030 Hb_004052_030 Hb_000984_160--Hb_004052_030 Hb_001946_120 Hb_001946_120 Hb_000984_160--Hb_001946_120 Hb_000984_160--Hb_000847_030 Hb_002007_220 Hb_002007_220 Hb_018591_020--Hb_002007_220 Hb_000046_120 Hb_000046_120 Hb_018591_020--Hb_000046_120 Hb_033363_040 Hb_033363_040 Hb_018591_020--Hb_033363_040 Hb_025557_060 Hb_025557_060 Hb_018591_020--Hb_025557_060 Hb_000608_290 Hb_000608_290 Hb_018591_020--Hb_000608_290 Hb_000002_500 Hb_000002_500 Hb_018591_020--Hb_000002_500
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.172458 3.95321 17.8653 11.5818 0.0649694 0.275901
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0931836 0.109991 0.21017 2.48276 28.9604

CAGE analysis