Hb_000049_100

Information

Type -
Description -
Location Contig49: 81526-83912
Sequence    

Annotation

kegg
ID rcu:RCOM_0542030
description Photosystem II reaction center W protein, putative
nr
ID XP_002526538.1
description Photosystem II reaction center W protein, putative [Ricinus communis]
swissprot
ID Q0JG75
description Photosystem II reaction center PSB28 protein, chloroplastic OS=Oryza sativa subsp. japonica GN=PSB28 PE=2 SV=2
trembl
ID B9SKL9
description Photosystem II reaction center Psb28 protein OS=Ricinus communis GN=RCOM_0542030 PE=3 SV=1
Gene Ontology
ID GO:0009654
description photosystem ii reaction center psb28 chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45251: 81579-84000 , PASA_asmbl_45254: 81596-83885
cDNA
(Sanger)
(ID:Location)		 020_B01.ab1: 81585-83683

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000049_100 0.0 - - Photosystem II reaction center W protein, putative [Ricinus communis]
2 Hb_000390_160 0.0692077222 - - PREDICTED: adenosine kinase [Jatropha curcas]
3 Hb_000254_130 0.070423475 - - Photosystem I reaction center subunit VI, chloroplast precursor, putative [Ricinus communis]
4 Hb_003120_020 0.0743765728 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter B family member 13-like [Prunus mume]
5 Hb_002375_030 0.074974947 - - F-box family protein [Populus trichocarpa]
6 Hb_003632_020 0.0782250242 - - calcium-binding family protein [Populus trichocarpa]
7 Hb_010326_020 0.0827088593 - - PREDICTED: thioredoxin-like 4, chloroplastic [Jatropha curcas]
8 Hb_003777_080 0.0839151208 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Populus euphratica]
9 Hb_007597_030 0.084802739 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
10 Hb_008195_070 0.0852679198 - - PREDICTED: thylakoid lumenal protein At1g12250, chloroplastic isoform X2 [Jatropha curcas]
11 Hb_001999_230 0.0859895939 - - PREDICTED: uncharacterized protein LOC105630678 [Jatropha curcas]
12 Hb_153258_040 0.0870302044 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2-like [Jatropha curcas]
13 Hb_000369_110 0.0870359846 - - ankyrin repeat-containing protein, putative [Ricinus communis]
14 Hb_001277_350 0.0872076907 - - early light-induced protein, putative [Ricinus communis]
15 Hb_000069_760 0.0872369076 - - PREDICTED: protein CURVATURE THYLAKOID 1A, chloroplastic [Jatropha curcas]
16 Hb_006970_030 0.0883632603 - - synaptotagmin, putative [Ricinus communis]
17 Hb_005210_010 0.0884483122 - - PREDICTED: uncharacterized protein LOC105638163 [Jatropha curcas]
18 Hb_000099_120 0.0887698665 - - PREDICTED: GDT1-like protein 1, chloroplastic isoform X3 [Jatropha curcas]
19 Hb_001975_100 0.0890445085 - - chlorophyll a-b binding protein 151, chloroplastic [Jatropha curcas]
20 Hb_000497_050 0.0890954473 - - PREDICTED: photosystem II repair protein PSB27-H1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000049_100 Hb_000049_100 Hb_000390_160 Hb_000390_160 Hb_000049_100--Hb_000390_160 Hb_000254_130 Hb_000254_130 Hb_000049_100--Hb_000254_130 Hb_003120_020 Hb_003120_020 Hb_000049_100--Hb_003120_020 Hb_002375_030 Hb_002375_030 Hb_000049_100--Hb_002375_030 Hb_003632_020 Hb_003632_020 Hb_000049_100--Hb_003632_020 Hb_010326_020 Hb_010326_020 Hb_000049_100--Hb_010326_020 Hb_000069_760 Hb_000069_760 Hb_000390_160--Hb_000069_760 Hb_003777_080 Hb_003777_080 Hb_000390_160--Hb_003777_080 Hb_001141_340 Hb_001141_340 Hb_000390_160--Hb_001141_340 Hb_001958_060 Hb_001958_060 Hb_000390_160--Hb_001958_060 Hb_005210_010 Hb_005210_010 Hb_000390_160--Hb_005210_010 Hb_001975_100 Hb_001975_100 Hb_000254_130--Hb_001975_100 Hb_001999_230 Hb_001999_230 Hb_000254_130--Hb_001999_230 Hb_008225_050 Hb_008225_050 Hb_000254_130--Hb_008225_050 Hb_003025_160 Hb_003025_160 Hb_000254_130--Hb_003025_160 Hb_005063_030 Hb_005063_030 Hb_000254_130--Hb_005063_030 Hb_002752_020 Hb_002752_020 Hb_000254_130--Hb_002752_020 Hb_000808_130 Hb_000808_130 Hb_003120_020--Hb_000808_130 Hb_000881_070 Hb_000881_070 Hb_003120_020--Hb_000881_070 Hb_003120_020--Hb_010326_020 Hb_001534_060 Hb_001534_060 Hb_003120_020--Hb_001534_060 Hb_003120_020--Hb_002375_030 Hb_008195_070 Hb_008195_070 Hb_002375_030--Hb_008195_070 Hb_001006_040 Hb_001006_040 Hb_002375_030--Hb_001006_040 Hb_001292_030 Hb_001292_030 Hb_002375_030--Hb_001292_030 Hb_002375_030--Hb_001975_100 Hb_002375_030--Hb_000254_130 Hb_003632_020--Hb_010326_020 Hb_011724_040 Hb_011724_040 Hb_003632_020--Hb_011724_040 Hb_002121_050 Hb_002121_050 Hb_003632_020--Hb_002121_050 Hb_003632_020--Hb_002375_030 Hb_001277_350 Hb_001277_350 Hb_003632_020--Hb_001277_350 Hb_003632_020--Hb_008195_070 Hb_010326_020--Hb_011724_040 Hb_003020_120 Hb_003020_120 Hb_010326_020--Hb_003020_120 Hb_000230_420 Hb_000230_420 Hb_010326_020--Hb_000230_420 Hb_000369_110 Hb_000369_110 Hb_010326_020--Hb_000369_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.613756 8.70319 139.847 77.1036 1.02571 0.698448
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.75081 2.29493 1.30241 3.51022 227.214

CAGE analysis