Hb_002375_030

Information

Type -
Description -
Location Contig2375: 48977-50212
Sequence    

Annotation

kegg
ID pop:POPTR_0009s02891g
description POPTRDRAFT_558147; F-box family protein
nr
ID XP_002314220.1
description F-box family protein [Populus trichocarpa]
swissprot
ID Q8GX29
description F-box/kelch-repeat protein SKIP25 OS=Arabidopsis thaliana GN=SKIP25 PE=1 SV=1
trembl
ID B9HPR6
description F-box family protein OS=Populus trichocarpa GN=POPTR_0009s02891g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24939: 48660-49850
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002375_030 0.0 - - F-box family protein [Populus trichocarpa]
2 Hb_008195_070 0.0590194714 - - PREDICTED: thylakoid lumenal protein At1g12250, chloroplastic isoform X2 [Jatropha curcas]
3 Hb_001006_040 0.0695009772 - - PREDICTED: pentatricopeptide repeat-containing protein At5g13770, chloroplastic-like isoform X1 [Populus euphratica]
4 Hb_001292_030 0.0699817193 - - PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic [Jatropha curcas]
5 Hb_001975_100 0.0727738317 - - chlorophyll a-b binding protein 151, chloroplastic [Jatropha curcas]
6 Hb_000254_130 0.0734556364 - - Photosystem I reaction center subunit VI, chloroplast precursor, putative [Ricinus communis]
7 Hb_000049_100 0.074974947 - - Photosystem II reaction center W protein, putative [Ricinus communis]
8 Hb_003632_020 0.0753335198 - - calcium-binding family protein [Populus trichocarpa]
9 Hb_000230_420 0.0759466492 - - GS [Hevea brasiliensis subsp. brasiliensis]
10 Hb_002272_210 0.0762812554 - - PREDICTED: UPF0603 protein At1g54780, chloroplastic [Jatropha curcas]
11 Hb_146225_020 0.0772944065 - - chlorophyll A/B binding protein, putative [Ricinus communis]
12 Hb_001682_020 0.0784094952 - - PREDICTED: uncharacterized protein LOC105628366 [Jatropha curcas]
13 Hb_003623_080 0.0796875912 - - PREDICTED: pheophytinase, chloroplastic [Populus euphratica]
14 Hb_008225_050 0.0810425511 - - hypothetical protein PRUPE_ppa004332mg [Prunus persica]
15 Hb_003777_080 0.0813654418 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Populus euphratica]
16 Hb_001277_350 0.0825923492 - - early light-induced protein, putative [Ricinus communis]
17 Hb_005063_030 0.0831513393 - - Photosystem II reaction center W protein, chloroplast precursor, putative [Ricinus communis]
18 Hb_001322_120 0.0833764936 - - nutrient reservoir, putative [Ricinus communis]
19 Hb_002121_050 0.083898138 - - hypothetical protein EUGRSUZ_D02586 [Eucalyptus grandis]
20 Hb_001343_030 0.0840790494 - - PREDICTED: NAD(P)H-quinone oxidoreductase subunit N, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_002375_030 Hb_002375_030 Hb_008195_070 Hb_008195_070 Hb_002375_030--Hb_008195_070 Hb_001006_040 Hb_001006_040 Hb_002375_030--Hb_001006_040 Hb_001292_030 Hb_001292_030 Hb_002375_030--Hb_001292_030 Hb_001975_100 Hb_001975_100 Hb_002375_030--Hb_001975_100 Hb_000254_130 Hb_000254_130 Hb_002375_030--Hb_000254_130 Hb_000049_100 Hb_000049_100 Hb_002375_030--Hb_000049_100 Hb_146225_020 Hb_146225_020 Hb_008195_070--Hb_146225_020 Hb_000719_030 Hb_000719_030 Hb_008195_070--Hb_000719_030 Hb_013726_060 Hb_013726_060 Hb_008195_070--Hb_013726_060 Hb_002121_050 Hb_002121_050 Hb_008195_070--Hb_002121_050 Hb_000230_420 Hb_000230_420 Hb_008195_070--Hb_000230_420 Hb_002785_030 Hb_002785_030 Hb_001006_040--Hb_002785_030 Hb_001006_040--Hb_001292_030 Hb_001006_040--Hb_001975_100 Hb_001322_120 Hb_001322_120 Hb_001006_040--Hb_001322_120 Hb_005063_030 Hb_005063_030 Hb_001006_040--Hb_005063_030 Hb_001028_040 Hb_001028_040 Hb_001006_040--Hb_001028_040 Hb_001292_030--Hb_002785_030 Hb_001292_030--Hb_001322_120 Hb_001292_030--Hb_000230_420 Hb_006570_030 Hb_006570_030 Hb_001292_030--Hb_006570_030 Hb_001292_030--Hb_001975_100 Hb_001975_100--Hb_005063_030 Hb_001975_100--Hb_000254_130 Hb_001564_120 Hb_001564_120 Hb_001975_100--Hb_001564_120 Hb_008225_050 Hb_008225_050 Hb_001975_100--Hb_008225_050 Hb_001999_230 Hb_001999_230 Hb_000254_130--Hb_001999_230 Hb_000254_130--Hb_008225_050 Hb_003025_160 Hb_003025_160 Hb_000254_130--Hb_003025_160 Hb_000254_130--Hb_005063_030 Hb_002752_020 Hb_002752_020 Hb_000254_130--Hb_002752_020 Hb_000390_160 Hb_000390_160 Hb_000049_100--Hb_000390_160 Hb_000049_100--Hb_000254_130 Hb_003120_020 Hb_003120_020 Hb_000049_100--Hb_003120_020 Hb_003632_020 Hb_003632_020 Hb_000049_100--Hb_003632_020 Hb_010326_020 Hb_010326_020 Hb_000049_100--Hb_010326_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.167056 0.98958 15.3505 6.6388 0.0343929 0.0357376
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0391646 0 0.114793 0.185022 22.0964

CAGE analysis