Hb_005210_010

Information

Type -
Description -
Location Contig5210: 25883-28592
Sequence    

Annotation

kegg
ID pop:POPTR_0019s10280g
description hypothetical protein
nr
ID XP_012077312.1
description PREDICTED: uncharacterized protein LOC105638163 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LEG3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17235 PE=4 SV=1
Gene Ontology
ID GO:0009535
description rieske domain containing expressed

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46740: 25933-28418
cDNA
(Sanger)
(ID:Location)		 006_M03.ab1: 25933-27799 , 043_F13.ab1: 25933-27826

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005210_010 0.0 - - PREDICTED: uncharacterized protein LOC105638163 [Jatropha curcas]
2 Hb_005523_040 0.0833899089 - - PREDICTED: uncharacterized protein LOC100253680 [Vitis vinifera]
3 Hb_000049_100 0.0884483122 - - Photosystem II reaction center W protein, putative [Ricinus communis]
4 Hb_000390_160 0.0895850534 - - PREDICTED: adenosine kinase [Jatropha curcas]
5 Hb_001195_290 0.0896214837 - - PREDICTED: uncharacterized protein LOC105633792 [Jatropha curcas]
6 Hb_000856_280 0.0914598059 - - PREDICTED: uncharacterized protein LOC105640491 [Jatropha curcas]
7 Hb_006970_030 0.1036472186 - - synaptotagmin, putative [Ricinus communis]
8 Hb_001517_010 0.1037118731 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002636_030 0.1057086669 - - hypothetical protein JCGZ_11800 [Jatropha curcas]
10 Hb_000544_070 0.1068115675 - - Peptidyl-prolyl cis-trans isomerase FKBP17-2 [Morus notabilis]
11 Hb_004306_090 0.1068140896 - - PREDICTED: uncharacterized protein LOC105644392 isoform X2 [Jatropha curcas]
12 Hb_001268_170 0.1071007345 - - glycerophosphodiester phosphodiesterase, putative [Ricinus communis]
13 Hb_007597_030 0.1090189911 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
14 Hb_003602_100 0.109301787 - - Glutamyl-tRNA reductase 1, chloroplast precursor, putative [Ricinus communis]
15 Hb_091433_050 0.110034914 - - PREDICTED: uncharacterized protein LOC105646626 [Jatropha curcas]
16 Hb_003605_060 0.1100962306 - - PREDICTED: ATP synthase subunit delta, chloroplastic [Jatropha curcas]
17 Hb_000077_380 0.1109934666 - - PREDICTED: protochlorophyllide reductase [Jatropha curcas]
18 Hb_074548_010 0.112743403 - - PREDICTED: 28 kDa ribonucleoprotein, chloroplastic isoform X1 [Jatropha curcas]
19 Hb_002609_140 0.1135731633 - - PREDICTED: sodium-dependent phosphate transport protein 1, chloroplastic isoform X1 [Jatropha curcas]
20 Hb_021531_010 0.1137351888 - - receptor-kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_005210_010 Hb_005210_010 Hb_005523_040 Hb_005523_040 Hb_005210_010--Hb_005523_040 Hb_000049_100 Hb_000049_100 Hb_005210_010--Hb_000049_100 Hb_000390_160 Hb_000390_160 Hb_005210_010--Hb_000390_160 Hb_001195_290 Hb_001195_290 Hb_005210_010--Hb_001195_290 Hb_000856_280 Hb_000856_280 Hb_005210_010--Hb_000856_280 Hb_006970_030 Hb_006970_030 Hb_005210_010--Hb_006970_030 Hb_001517_010 Hb_001517_010 Hb_005523_040--Hb_001517_010 Hb_074548_010 Hb_074548_010 Hb_005523_040--Hb_074548_010 Hb_005523_040--Hb_000856_280 Hb_005348_120 Hb_005348_120 Hb_005523_040--Hb_005348_120 Hb_005523_040--Hb_001195_290 Hb_000049_100--Hb_000390_160 Hb_000254_130 Hb_000254_130 Hb_000049_100--Hb_000254_130 Hb_003120_020 Hb_003120_020 Hb_000049_100--Hb_003120_020 Hb_002375_030 Hb_002375_030 Hb_000049_100--Hb_002375_030 Hb_003632_020 Hb_003632_020 Hb_000049_100--Hb_003632_020 Hb_010326_020 Hb_010326_020 Hb_000049_100--Hb_010326_020 Hb_000069_760 Hb_000069_760 Hb_000390_160--Hb_000069_760 Hb_003777_080 Hb_003777_080 Hb_000390_160--Hb_003777_080 Hb_001141_340 Hb_001141_340 Hb_000390_160--Hb_001141_340 Hb_001958_060 Hb_001958_060 Hb_000390_160--Hb_001958_060 Hb_006472_040 Hb_006472_040 Hb_001195_290--Hb_006472_040 Hb_001195_290--Hb_001517_010 Hb_008112_020 Hb_008112_020 Hb_001195_290--Hb_008112_020 Hb_001268_170 Hb_001268_170 Hb_001195_290--Hb_001268_170 Hb_134949_010 Hb_134949_010 Hb_001195_290--Hb_134949_010 Hb_003605_060 Hb_003605_060 Hb_000856_280--Hb_003605_060 Hb_002485_050 Hb_002485_050 Hb_000856_280--Hb_002485_050 Hb_007803_040 Hb_007803_040 Hb_000856_280--Hb_007803_040 Hb_000856_280--Hb_001195_290 Hb_153258_040 Hb_153258_040 Hb_006970_030--Hb_153258_040 Hb_006970_030--Hb_003777_080 Hb_000140_460 Hb_000140_460 Hb_006970_030--Hb_000140_460 Hb_004970_060 Hb_004970_060 Hb_006970_030--Hb_004970_060 Hb_000950_020 Hb_000950_020 Hb_006970_030--Hb_000950_020 Hb_006970_030--Hb_000049_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.580111 9.59001 74.3217 32.5452 0.293182 0.692249
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.60247 2.52151 3.0964 2.29824 131.1

CAGE analysis