Hb_007803_040

Information

Type -
Description -
Location Contig7803: 32313-42134
Sequence    

Annotation

kegg
ID pop:POPTR_0001s41530g
description hypothetical protein
nr
ID XP_012070630.1
description PREDICTED: peptidyl-prolyl cis-trans isomerase CYP37, chloroplastic [Jatropha curcas]
swissprot
ID P82869
description Peptidyl-prolyl cis-trans isomerase CYP37, chloroplastic OS=Arabidopsis thaliana GN=CYP37 PE=1 SV=3
trembl
ID A0A067L348
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00682 PE=4 SV=1
Gene Ontology
ID GO:0009535
description peptidyl-prolyl cis-trans isomerase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57943: 32344-41816 , PASA_asmbl_57944: 32339-41635 , PASA_asmbl_57945: 38058-38292
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007803_040 0.0 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP37, chloroplastic [Jatropha curcas]
2 Hb_002485_050 0.0597579165 - - PREDICTED: probable plastid-lipid-associated protein 12, chloroplastic [Jatropha curcas]
3 Hb_000856_280 0.0780086395 - - PREDICTED: uncharacterized protein LOC105640491 [Jatropha curcas]
4 Hb_009393_130 0.0792390296 - - PREDICTED: uncharacterized protein LOC105638053 isoform X4 [Jatropha curcas]
5 Hb_005488_190 0.0795855222 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
6 Hb_003605_060 0.0836717336 - - PREDICTED: ATP synthase subunit delta, chloroplastic [Jatropha curcas]
7 Hb_000544_070 0.0873276279 - - Peptidyl-prolyl cis-trans isomerase FKBP17-2 [Morus notabilis]
8 Hb_002811_250 0.0971054102 - - PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Jatropha curcas]
9 Hb_058620_080 0.0987722688 - - PREDICTED: phosphoglycerate kinase, chloroplastic [Jatropha curcas]
10 Hb_002495_090 0.1041011849 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH48 isoform X2 [Jatropha curcas]
11 Hb_003602_100 0.1044718733 - - Glutamyl-tRNA reductase 1, chloroplast precursor, putative [Ricinus communis]
12 Hb_010721_020 0.1063982938 - - PREDICTED: photosynthetic NDH subunit of lumenal location 4, chloroplastic [Jatropha curcas]
13 Hb_000174_080 0.1069414785 - - 4-nitrophenylphosphatase, putative [Ricinus communis]
14 Hb_001195_290 0.108591173 - - PREDICTED: uncharacterized protein LOC105633792 [Jatropha curcas]
15 Hb_000062_480 0.1094233984 - - PREDICTED: 4-coumarate--CoA ligase-like 9 isoform X1 [Jatropha curcas]
16 Hb_134949_010 0.1118146939 - - PREDICTED: uncharacterized protein LOC105629574 [Jatropha curcas]
17 Hb_000193_220 0.112494571 - - PREDICTED: ribulose-phosphate 3-epimerase, chloroplastic [Jatropha curcas]
18 Hb_002249_090 0.112984698 - - PREDICTED: magnesium protoporphyrin IX methyltransferase, chloroplastic [Jatropha curcas]
19 Hb_010557_010 0.1132196615 - - PREDICTED: 50S ribosomal protein L3, chloroplastic [Jatropha curcas]
20 Hb_002235_070 0.1165133336 - - PREDICTED: uncharacterized protein LOC105644108 [Jatropha curcas]

Gene co-expression network

sample Hb_007803_040 Hb_007803_040 Hb_002485_050 Hb_002485_050 Hb_007803_040--Hb_002485_050 Hb_000856_280 Hb_000856_280 Hb_007803_040--Hb_000856_280 Hb_009393_130 Hb_009393_130 Hb_007803_040--Hb_009393_130 Hb_005488_190 Hb_005488_190 Hb_007803_040--Hb_005488_190 Hb_003605_060 Hb_003605_060 Hb_007803_040--Hb_003605_060 Hb_000544_070 Hb_000544_070 Hb_007803_040--Hb_000544_070 Hb_002485_050--Hb_003605_060 Hb_002485_050--Hb_000856_280 Hb_002485_050--Hb_000544_070 Hb_074548_010 Hb_074548_010 Hb_002485_050--Hb_074548_010 Hb_002485_050--Hb_009393_130 Hb_000856_280--Hb_003605_060 Hb_005523_040 Hb_005523_040 Hb_000856_280--Hb_005523_040 Hb_005210_010 Hb_005210_010 Hb_000856_280--Hb_005210_010 Hb_001195_290 Hb_001195_290 Hb_000856_280--Hb_001195_290 Hb_003680_060 Hb_003680_060 Hb_009393_130--Hb_003680_060 Hb_009393_130--Hb_003605_060 Hb_009838_070 Hb_009838_070 Hb_009393_130--Hb_009838_070 Hb_010557_010 Hb_010557_010 Hb_009393_130--Hb_010557_010 Hb_002811_250 Hb_002811_250 Hb_009393_130--Hb_002811_250 Hb_005488_190--Hb_002811_250 Hb_006681_020 Hb_006681_020 Hb_005488_190--Hb_006681_020 Hb_005488_190--Hb_009393_130 Hb_002495_090 Hb_002495_090 Hb_005488_190--Hb_002495_090 Hb_000062_480 Hb_000062_480 Hb_005488_190--Hb_000062_480 Hb_003605_060--Hb_074548_010 Hb_002636_030 Hb_002636_030 Hb_003605_060--Hb_002636_030 Hb_004306_090 Hb_004306_090 Hb_000544_070--Hb_004306_090 Hb_002609_140 Hb_002609_140 Hb_000544_070--Hb_002609_140 Hb_004920_020 Hb_004920_020 Hb_000544_070--Hb_004920_020 Hb_000544_070--Hb_074548_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.763003 2.25287 25.4411 8.80016 1.15031 1.17497
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.07883 0.848787 0.492551 1.83051 38.3598

CAGE analysis