Hb_000544_070

Information

Type -
Description -
Location Contig544: 110058-111403
Sequence    

Annotation

kegg
ID rcu:RCOM_0171180
description FK506 binding protein, putative
nr
ID XP_010097575.1
description Peptidyl-prolyl cis-trans isomerase FKBP17-2 [Morus notabilis]
swissprot
ID Q9LDY5
description Peptidyl-prolyl cis-trans isomerase FKBP17-2, chloroplastic OS=Arabidopsis thaliana GN=FKBP17-2 PE=1 SV=1
trembl
ID W9RFH9
description Peptidyl-prolyl cis-trans isomerase OS=Morus notabilis GN=L484_017385 PE=4 SV=1
Gene Ontology
ID GO:0003755
description peptidyl-prolyl cis-trans isomerase fkbp17- chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47920: 66413-109553 , PASA_asmbl_47923: 110024-111518
cDNA
(Sanger)
(ID:Location)		 014_I15.ab1: 110024-111365 , 017_P02.ab1: 110412-111518 , 031_J21.ab1: 110024-111399 , 043_E20.ab1: 110024-111399 , 046_C09.ab1: 110051-111291

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000544_070 0.0 - - Peptidyl-prolyl cis-trans isomerase FKBP17-2 [Morus notabilis]
2 Hb_004306_090 0.0723823176 - - PREDICTED: uncharacterized protein LOC105644392 isoform X2 [Jatropha curcas]
3 Hb_002485_050 0.0821892263 - - PREDICTED: probable plastid-lipid-associated protein 12, chloroplastic [Jatropha curcas]
4 Hb_002609_140 0.0839519575 - - PREDICTED: sodium-dependent phosphate transport protein 1, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_007803_040 0.0873276279 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP37, chloroplastic [Jatropha curcas]
6 Hb_004920_020 0.0905718664 - - hypothetical protein POPTR_0014s11700g [Populus trichocarpa]
7 Hb_074548_010 0.0939470829 - - PREDICTED: 28 kDa ribonucleoprotein, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_005527_070 0.0955756952 - - short-chain dehydrogenase/reductase family protein [Populus trichocarpa]
9 Hb_002249_090 0.0956036629 - - PREDICTED: magnesium protoporphyrin IX methyltransferase, chloroplastic [Jatropha curcas]
10 Hb_005977_040 0.0974495075 - - Photosystem I reaction center subunit IV A [Medicago truncatula]
11 Hb_005523_040 0.0988126532 - - PREDICTED: uncharacterized protein LOC100253680 [Vitis vinifera]
12 Hb_005211_080 0.0995263524 - - hypothetical protein POPTR_0010s13740g [Populus trichocarpa]
13 Hb_003605_060 0.102059795 - - PREDICTED: ATP synthase subunit delta, chloroplastic [Jatropha curcas]
14 Hb_000950_020 0.1026144646 - - PREDICTED: glycerol-3-phosphate dehydrogenase [NAD(+)] GPDHC1, cytosolic [Jatropha curcas]
15 Hb_021531_010 0.1059774495 - - receptor-kinase, putative [Ricinus communis]
16 Hb_005210_010 0.1068115675 - - PREDICTED: uncharacterized protein LOC105638163 [Jatropha curcas]
17 Hb_000856_280 0.1072588293 - - PREDICTED: uncharacterized protein LOC105640491 [Jatropha curcas]
18 Hb_005000_110 0.1080500029 - - PREDICTED: uncharacterized protein LOC105637872 isoform X1 [Jatropha curcas]
19 Hb_007597_030 0.1088259425 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
20 Hb_003373_050 0.1088911228 - - receptor protein kinase zmpk1, putative [Ricinus communis]

Gene co-expression network

sample Hb_000544_070 Hb_000544_070 Hb_004306_090 Hb_004306_090 Hb_000544_070--Hb_004306_090 Hb_002485_050 Hb_002485_050 Hb_000544_070--Hb_002485_050 Hb_002609_140 Hb_002609_140 Hb_000544_070--Hb_002609_140 Hb_007803_040 Hb_007803_040 Hb_000544_070--Hb_007803_040 Hb_004920_020 Hb_004920_020 Hb_000544_070--Hb_004920_020 Hb_074548_010 Hb_074548_010 Hb_000544_070--Hb_074548_010 Hb_005211_080 Hb_005211_080 Hb_004306_090--Hb_005211_080 Hb_005329_010 Hb_005329_010 Hb_004306_090--Hb_005329_010 Hb_000460_040 Hb_000460_040 Hb_004306_090--Hb_000460_040 Hb_001006_150 Hb_001006_150 Hb_004306_090--Hb_001006_150 Hb_005433_020 Hb_005433_020 Hb_004306_090--Hb_005433_020 Hb_003605_060 Hb_003605_060 Hb_002485_050--Hb_003605_060 Hb_002485_050--Hb_007803_040 Hb_000856_280 Hb_000856_280 Hb_002485_050--Hb_000856_280 Hb_002485_050--Hb_074548_010 Hb_009393_130 Hb_009393_130 Hb_002485_050--Hb_009393_130 Hb_005977_040 Hb_005977_040 Hb_002609_140--Hb_005977_040 Hb_002249_090 Hb_002249_090 Hb_002609_140--Hb_002249_090 Hb_002609_140--Hb_004306_090 Hb_107647_010 Hb_107647_010 Hb_002609_140--Hb_107647_010 Hb_117807_020 Hb_117807_020 Hb_002609_140--Hb_117807_020 Hb_007803_040--Hb_000856_280 Hb_007803_040--Hb_009393_130 Hb_005488_190 Hb_005488_190 Hb_007803_040--Hb_005488_190 Hb_007803_040--Hb_003605_060 Hb_000128_040 Hb_000128_040 Hb_004920_020--Hb_000128_040 Hb_000950_020 Hb_000950_020 Hb_004920_020--Hb_000950_020 Hb_005000_110 Hb_005000_110 Hb_004920_020--Hb_005000_110 Hb_004920_020--Hb_005211_080 Hb_000300_110 Hb_000300_110 Hb_004920_020--Hb_000300_110 Hb_074548_010--Hb_003605_060 Hb_005523_040 Hb_005523_040 Hb_074548_010--Hb_005523_040 Hb_002636_030 Hb_002636_030 Hb_074548_010--Hb_002636_030 Hb_074548_010--Hb_005977_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.2149 18.1097 159.729 45.0706 2.77066 2.99873
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.94093 2.15109 0.680308 7.33804 209.213

CAGE analysis