Hb_005488_190

Information

Type -
Description -
Location Contig5488: 131755-136700
Sequence    

Annotation

kegg
ID rcu:RCOM_1517450
description RNA polymerase sigma factor rpoD, putative
nr
ID XP_002524027.1
description RNA polymerase sigma factor rpoD, putative [Ricinus communis]
swissprot
ID O24629
description RNA polymerase sigma factor sigA OS=Arabidopsis thaliana GN=SIGA PE=1 SV=1
trembl
ID B9SDF8
description RNA polymerase sigma factor rpoD, putative OS=Ricinus communis GN=RCOM_1517450 PE=4 SV=1
Gene Ontology
ID GO:0001053
description rna polymerase sigma factor siga

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48131: 131805-136611
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005488_190 0.0 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
2 Hb_007803_040 0.0795855222 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP37, chloroplastic [Jatropha curcas]
3 Hb_002811_250 0.0927398791 - - PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Jatropha curcas]
4 Hb_006681_020 0.0940168799 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP38, chloroplastic [Jatropha curcas]
5 Hb_009393_130 0.0956685356 - - PREDICTED: uncharacterized protein LOC105638053 isoform X4 [Jatropha curcas]
6 Hb_002495_090 0.0959240281 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH48 isoform X2 [Jatropha curcas]
7 Hb_000062_480 0.0974274877 - - PREDICTED: 4-coumarate--CoA ligase-like 9 isoform X1 [Jatropha curcas]
8 Hb_004855_070 0.0976474885 - - PLASTID-SPECIFIC RIBOSOMAL protein 4 [Populus trichocarpa]
9 Hb_002485_050 0.1005305546 - - PREDICTED: probable plastid-lipid-associated protein 12, chloroplastic [Jatropha curcas]
10 Hb_000703_070 0.1009166505 - - PREDICTED: uncharacterized protein LOC105635704 isoform X1 [Jatropha curcas]
11 Hb_000544_080 0.1072633735 - - PREDICTED: uncharacterized protein LOC105631062 isoform X3 [Jatropha curcas]
12 Hb_000768_120 0.1078752529 - - PREDICTED: RNA polymerase sigma factor sigB [Jatropha curcas]
13 Hb_000679_080 0.109305562 - - PREDICTED: lactation elevated protein 1 isoform X1 [Jatropha curcas]
14 Hb_010721_020 0.1097176538 - - PREDICTED: photosynthetic NDH subunit of lumenal location 4, chloroplastic [Jatropha curcas]
15 Hb_000134_040 0.1098304383 - - PREDICTED: 30S ribosomal protein 2, chloroplastic [Jatropha curcas]
16 Hb_004208_090 0.1104712307 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
17 Hb_000045_050 0.1113674345 - - PREDICTED: probable zinc metalloprotease EGY2, chloroplastic [Jatropha curcas]
18 Hb_126933_020 0.1118304222 - - PREDICTED: uncharacterized protein LOC105638525 [Jatropha curcas]
19 Hb_010557_010 0.1133715342 - - PREDICTED: 50S ribosomal protein L3, chloroplastic [Jatropha curcas]
20 Hb_000327_260 0.1144665111 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_005488_190 Hb_005488_190 Hb_007803_040 Hb_007803_040 Hb_005488_190--Hb_007803_040 Hb_002811_250 Hb_002811_250 Hb_005488_190--Hb_002811_250 Hb_006681_020 Hb_006681_020 Hb_005488_190--Hb_006681_020 Hb_009393_130 Hb_009393_130 Hb_005488_190--Hb_009393_130 Hb_002495_090 Hb_002495_090 Hb_005488_190--Hb_002495_090 Hb_000062_480 Hb_000062_480 Hb_005488_190--Hb_000062_480 Hb_002485_050 Hb_002485_050 Hb_007803_040--Hb_002485_050 Hb_000856_280 Hb_000856_280 Hb_007803_040--Hb_000856_280 Hb_007803_040--Hb_009393_130 Hb_003605_060 Hb_003605_060 Hb_007803_040--Hb_003605_060 Hb_000544_070 Hb_000544_070 Hb_007803_040--Hb_000544_070 Hb_000193_220 Hb_000193_220 Hb_002811_250--Hb_000193_220 Hb_010557_010 Hb_010557_010 Hb_002811_250--Hb_010557_010 Hb_000803_170 Hb_000803_170 Hb_002811_250--Hb_000803_170 Hb_005181_120 Hb_005181_120 Hb_002811_250--Hb_005181_120 Hb_010098_040 Hb_010098_040 Hb_002811_250--Hb_010098_040 Hb_000679_080 Hb_000679_080 Hb_002811_250--Hb_000679_080 Hb_000768_120 Hb_000768_120 Hb_006681_020--Hb_000768_120 Hb_001999_260 Hb_001999_260 Hb_006681_020--Hb_001999_260 Hb_004855_070 Hb_004855_070 Hb_006681_020--Hb_004855_070 Hb_006583_030 Hb_006583_030 Hb_006681_020--Hb_006583_030 Hb_004117_150 Hb_004117_150 Hb_006681_020--Hb_004117_150 Hb_000009_510 Hb_000009_510 Hb_006681_020--Hb_000009_510 Hb_003680_060 Hb_003680_060 Hb_009393_130--Hb_003680_060 Hb_009393_130--Hb_003605_060 Hb_009838_070 Hb_009838_070 Hb_009393_130--Hb_009838_070 Hb_009393_130--Hb_010557_010 Hb_009393_130--Hb_002811_250 Hb_137216_010 Hb_137216_010 Hb_002495_090--Hb_137216_010 Hb_002495_090--Hb_000768_120 Hb_000134_040 Hb_000134_040 Hb_002495_090--Hb_000134_040 Hb_007479_010 Hb_007479_010 Hb_002495_090--Hb_007479_010 Hb_002495_090--Hb_006681_020 Hb_000062_480--Hb_006681_020 Hb_000062_480--Hb_000768_120 Hb_000062_480--Hb_007803_040 Hb_000062_480--Hb_004117_150 Hb_004208_090 Hb_004208_090 Hb_000062_480--Hb_004208_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.845 3.08883 28.4048 9.73453 1.60764 2.01818
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.777907 0.894614 0.38801 2.43279 33.9705

CAGE analysis