Hb_137216_010

Information

Type -
Description -
Location Contig137216: 913-2771
Sequence    

Annotation

kegg
ID rcu:RCOM_0727690
description amino acid binding protein, putative
nr
ID XP_006494811.1
description PREDICTED: unknown protein DS12 from 2D-PAGE of leaf, chloroplastic-like isoform X2 [Citrus sinensis]
swissprot
ID Q9FZ47
description ACT domain-containing protein ACR11 OS=Arabidopsis thaliana GN=ACR11 PE=1 SV=1
trembl
ID B9SAK5
description Amino acid binding protein, putative OS=Ricinus communis GN=RCOM_0727690 PE=4 SV=1
Gene Ontology
ID GO:0009535
description amino acid binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_137216_010 0.0 - - PREDICTED: unknown protein DS12 from 2D-PAGE of leaf, chloroplastic-like isoform X2 [Citrus sinensis]
2 Hb_002495_090 0.0776707584 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH48 isoform X2 [Jatropha curcas]
3 Hb_000393_040 0.0914021918 - - PREDICTED: uncharacterized protein LOC105128208 [Populus euphratica]
4 Hb_000174_080 0.0935776485 - - 4-nitrophenylphosphatase, putative [Ricinus communis]
5 Hb_000768_120 0.1057235942 - - PREDICTED: RNA polymerase sigma factor sigB [Jatropha curcas]
6 Hb_000009_510 0.1076496183 - - PREDICTED: uncharacterized protein LOC105126496 [Populus euphratica]
7 Hb_000302_230 0.1087563159 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000974_040 0.1095253352 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g49770 [Jatropha curcas]
9 Hb_006681_020 0.1104606782 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP38, chloroplastic [Jatropha curcas]
10 Hb_028227_060 0.1151078911 - - PREDICTED: non-specific lipid transfer protein GPI-anchored 1-like [Populus euphratica]
11 Hb_000544_080 0.1227696987 - - PREDICTED: uncharacterized protein LOC105631062 isoform X3 [Jatropha curcas]
12 Hb_007479_010 0.1237448982 - - Root phototropism protein, putative [Ricinus communis]
13 Hb_177281_010 0.1252708005 - - PREDICTED: 50S ribosomal protein 5, chloroplastic-like [Citrus sinensis]
14 Hb_000648_070 0.1261487811 - - PREDICTED: protein TIC 62, chloroplastic [Populus euphratica]
15 Hb_007803_040 0.1291006038 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP37, chloroplastic [Jatropha curcas]
16 Hb_005488_190 0.1301051131 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
17 Hb_058620_080 0.1303474655 - - PREDICTED: phosphoglycerate kinase, chloroplastic [Jatropha curcas]
18 Hb_002249_090 0.1327765478 - - PREDICTED: magnesium protoporphyrin IX methyltransferase, chloroplastic [Jatropha curcas]
19 Hb_006583_030 0.1359543637 - - PREDICTED: SPX and EXS domain-containing protein 1-like isoform X4 [Jatropha curcas]
20 Hb_011519_050 0.1370152758 - - hypothetical protein POPTR_0015s04810g [Populus trichocarpa]

Gene co-expression network

sample Hb_137216_010 Hb_137216_010 Hb_002495_090 Hb_002495_090 Hb_137216_010--Hb_002495_090 Hb_000393_040 Hb_000393_040 Hb_137216_010--Hb_000393_040 Hb_000174_080 Hb_000174_080 Hb_137216_010--Hb_000174_080 Hb_000768_120 Hb_000768_120 Hb_137216_010--Hb_000768_120 Hb_000009_510 Hb_000009_510 Hb_137216_010--Hb_000009_510 Hb_000302_230 Hb_000302_230 Hb_137216_010--Hb_000302_230 Hb_002495_090--Hb_000768_120 Hb_000134_040 Hb_000134_040 Hb_002495_090--Hb_000134_040 Hb_007479_010 Hb_007479_010 Hb_002495_090--Hb_007479_010 Hb_006681_020 Hb_006681_020 Hb_002495_090--Hb_006681_020 Hb_005488_190 Hb_005488_190 Hb_002495_090--Hb_005488_190 Hb_000393_040--Hb_000302_230 Hb_177281_010 Hb_177281_010 Hb_000393_040--Hb_177281_010 Hb_000393_040--Hb_000009_510 Hb_001135_070 Hb_001135_070 Hb_000393_040--Hb_001135_070 Hb_000974_040 Hb_000974_040 Hb_000393_040--Hb_000974_040 Hb_002249_090 Hb_002249_090 Hb_000174_080--Hb_002249_090 Hb_002071_030 Hb_002071_030 Hb_000174_080--Hb_002071_030 Hb_003602_100 Hb_003602_100 Hb_000174_080--Hb_003602_100 Hb_007803_040 Hb_007803_040 Hb_000174_080--Hb_007803_040 Hb_000174_080--Hb_000009_510 Hb_000768_120--Hb_006681_020 Hb_004855_070 Hb_004855_070 Hb_000768_120--Hb_004855_070 Hb_000768_120--Hb_007479_010 Hb_004208_090 Hb_004208_090 Hb_000768_120--Hb_004208_090 Hb_001999_260 Hb_001999_260 Hb_000768_120--Hb_001999_260 Hb_000009_510--Hb_006681_020 Hb_000009_510--Hb_000302_230 Hb_002485_050 Hb_002485_050 Hb_000009_510--Hb_002485_050 Hb_006583_030 Hb_006583_030 Hb_000009_510--Hb_006583_030 Hb_000302_230--Hb_006583_030 Hb_000302_230--Hb_006681_020 Hb_003680_060 Hb_003680_060 Hb_000302_230--Hb_003680_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.96472 4.21159 117.43 28.1572 2.90114 3.41343
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.97655 1.95367 2.67528 2.00873 109.532

CAGE analysis