Hb_006583_030

Information

Type -
Description -
Location Contig6583: 50802-64491
Sequence    

Annotation

kegg
ID rcu:RCOM_1550070
description hypothetical protein
nr
ID XP_012078153.1
description PREDICTED: SPX and EXS domain-containing protein 1-like isoform X4 [Jatropha curcas]
swissprot
ID Q9LJ45
description Cyclin-U1-1 OS=Arabidopsis thaliana GN=CYCU1-1 PE=1 SV=1
trembl
ID A0A067JST4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22898 PE=4 SV=1
Gene Ontology
ID GO:0016021
description spx and exs domain-containing protein 1-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52849: 50708-51977 , PASA_asmbl_52854: 58485-58886 , PASA_asmbl_52857: 52723-62638
cDNA
(Sanger)
(ID:Location)		 029_E06.ab1: 51141-51972

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006583_030 0.0 - - PREDICTED: SPX and EXS domain-containing protein 1-like isoform X4 [Jatropha curcas]
2 Hb_006681_020 0.0809136526 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP38, chloroplastic [Jatropha curcas]
3 Hb_001999_260 0.0813975577 - - PREDICTED: 50S ribosomal protein L4, chloroplastic [Jatropha curcas]
4 Hb_004855_070 0.0957467068 - - PLASTID-SPECIFIC RIBOSOMAL protein 4 [Populus trichocarpa]
5 Hb_000302_230 0.1000799986 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001047_180 0.1011517452 - - conserved hypothetical protein [Ricinus communis]
7 Hb_010557_010 0.1031013653 - - PREDICTED: 50S ribosomal protein L3, chloroplastic [Jatropha curcas]
8 Hb_015175_040 0.106409799 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000009_510 0.1090532344 - - PREDICTED: uncharacterized protein LOC105126496 [Populus euphratica]
10 Hb_003680_060 0.1108307517 - - hypothetical protein VITISV_022322 [Vitis vinifera]
11 Hb_000703_070 0.114766004 - - PREDICTED: uncharacterized protein LOC105635704 isoform X1 [Jatropha curcas]
12 Hb_000134_040 0.1148558163 - - PREDICTED: 30S ribosomal protein 2, chloroplastic [Jatropha curcas]
13 Hb_000768_120 0.1152484948 - - PREDICTED: RNA polymerase sigma factor sigB [Jatropha curcas]
14 Hb_002495_090 0.1165488751 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH48 isoform X2 [Jatropha curcas]
15 Hb_004208_090 0.1169788569 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
16 Hb_005000_060 0.118726797 - - PREDICTED: uncharacterized protein LOC105637867 [Jatropha curcas]
17 Hb_004117_150 0.121666998 - - PREDICTED: uncharacterized protein LOC105649105 [Jatropha curcas]
18 Hb_009545_070 0.1219806836 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14820 [Jatropha curcas]
19 Hb_002411_100 0.1241798708 - - PREDICTED: uncharacterized protein LOC105631266 [Jatropha curcas]
20 Hb_005488_190 0.1261193548 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]

Gene co-expression network

sample Hb_006583_030 Hb_006583_030 Hb_006681_020 Hb_006681_020 Hb_006583_030--Hb_006681_020 Hb_001999_260 Hb_001999_260 Hb_006583_030--Hb_001999_260 Hb_004855_070 Hb_004855_070 Hb_006583_030--Hb_004855_070 Hb_000302_230 Hb_000302_230 Hb_006583_030--Hb_000302_230 Hb_001047_180 Hb_001047_180 Hb_006583_030--Hb_001047_180 Hb_010557_010 Hb_010557_010 Hb_006583_030--Hb_010557_010 Hb_000768_120 Hb_000768_120 Hb_006681_020--Hb_000768_120 Hb_006681_020--Hb_001999_260 Hb_006681_020--Hb_004855_070 Hb_004117_150 Hb_004117_150 Hb_006681_020--Hb_004117_150 Hb_000009_510 Hb_000009_510 Hb_006681_020--Hb_000009_510 Hb_004208_090 Hb_004208_090 Hb_001999_260--Hb_004208_090 Hb_001999_260--Hb_004117_150 Hb_005000_060 Hb_005000_060 Hb_001999_260--Hb_005000_060 Hb_000934_260 Hb_000934_260 Hb_001999_260--Hb_000934_260 Hb_004855_070--Hb_000768_120 Hb_004855_070--Hb_004208_090 Hb_004855_070--Hb_001999_260 Hb_000134_040 Hb_000134_040 Hb_004855_070--Hb_000134_040 Hb_000302_230--Hb_000009_510 Hb_000393_040 Hb_000393_040 Hb_000302_230--Hb_000393_040 Hb_000302_230--Hb_006681_020 Hb_137216_010 Hb_137216_010 Hb_000302_230--Hb_137216_010 Hb_003680_060 Hb_003680_060 Hb_000302_230--Hb_003680_060 Hb_000146_030 Hb_000146_030 Hb_001047_180--Hb_000146_030 Hb_002411_100 Hb_002411_100 Hb_001047_180--Hb_002411_100 Hb_001047_180--Hb_010557_010 Hb_000703_070 Hb_000703_070 Hb_001047_180--Hb_000703_070 Hb_004007_170 Hb_004007_170 Hb_001047_180--Hb_004007_170 Hb_010557_010--Hb_002411_100 Hb_002811_250 Hb_002811_250 Hb_010557_010--Hb_002811_250 Hb_010557_010--Hb_000703_070 Hb_000803_170 Hb_000803_170 Hb_010557_010--Hb_000803_170 Hb_009393_130 Hb_009393_130 Hb_010557_010--Hb_009393_130 Hb_000045_050 Hb_000045_050 Hb_010557_010--Hb_000045_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.68348 7.51115 56.5955 13.2688 2.10306 1.69795
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.25577 2.98666 2.59155 2.60644 45.2039

CAGE analysis