Hb_005000_060

Information

Type -
Description -
Location Contig5000: 55463-59662
Sequence    

Annotation

kegg
ID rcu:RCOM_1047730
description methyltransferase, putative
nr
ID XP_012076907.1
description PREDICTED: uncharacterized protein LOC105637867 [Jatropha curcas]
swissprot
ID Q73AY2
description Demethylmenaquinone methyltransferase OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=menG PE=3 SV=1
trembl
ID B9RK97
description Methyltransferase, putative OS=Ricinus communis GN=RCOM_1047730 PE=4 SV=1
Gene Ontology
ID GO:0009507
description s-adenosyl-l-methionine-dependent methyltransferases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45789: 56608-58070 , PASA_asmbl_45791: 58713-59634 , PASA_asmbl_45792: 58713-58924
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005000_060 0.0 - - PREDICTED: uncharacterized protein LOC105637867 [Jatropha curcas]
2 Hb_001999_260 0.0934565025 - - PREDICTED: 50S ribosomal protein L4, chloroplastic [Jatropha curcas]
3 Hb_000146_030 0.114922631 - - PREDICTED: 50S ribosomal protein L10, chloroplastic [Jatropha curcas]
4 Hb_148146_010 0.1178614841 - - coproporphyrinogen III oxidase [Ziziphus jujuba]
5 Hb_004208_090 0.1182931429 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
6 Hb_006583_030 0.118726797 - - PREDICTED: SPX and EXS domain-containing protein 1-like isoform X4 [Jatropha curcas]
7 Hb_050514_020 0.1235468157 - - PREDICTED: abscisic acid receptor PYL4 [Jatropha curcas]
8 Hb_003664_030 0.1242333167 - - PREDICTED: mitochondrial carnitine/acylcarnitine carrier-like protein [Jatropha curcas]
9 Hb_001047_180 0.125932308 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000934_260 0.1291011871 - - Thylakoid lumenal 29.8 kDa protein, chloroplast precursor, putative [Ricinus communis]
11 Hb_003862_040 0.1298794098 - - Plastid-specific 30S ribosomal protein 1, chloroplast precursor, putative [Ricinus communis]
12 Hb_001711_060 0.1338421418 - - PREDICTED: ferredoxin isoform X1 [Jatropha curcas]
13 Hb_000322_040 0.1350963143 - - PREDICTED: lycopene epsilon cyclase, chloroplastic [Jatropha curcas]
14 Hb_000169_070 0.1355043156 - - PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1 [Jatropha curcas]
15 Hb_000056_310 0.1403308111 - - PREDICTED: uncharacterized protein LOC105630433 [Jatropha curcas]
16 Hb_004117_150 0.1418592701 - - PREDICTED: uncharacterized protein LOC105649105 [Jatropha curcas]
17 Hb_003470_100 0.1422951424 - - protein binding protein, putative [Ricinus communis]
18 Hb_006252_030 0.1437423564 - - PREDICTED: uncharacterized protein LOC105638333 [Jatropha curcas]
19 Hb_000637_070 0.144471438 - - PREDICTED: uncharacterized protein LOC105650668 [Jatropha curcas]
20 Hb_001638_310 0.1452679039 - - ribonucleoprotein, chloroplast, putative [Ricinus communis]

Gene co-expression network

sample Hb_005000_060 Hb_005000_060 Hb_001999_260 Hb_001999_260 Hb_005000_060--Hb_001999_260 Hb_000146_030 Hb_000146_030 Hb_005000_060--Hb_000146_030 Hb_148146_010 Hb_148146_010 Hb_005000_060--Hb_148146_010 Hb_004208_090 Hb_004208_090 Hb_005000_060--Hb_004208_090 Hb_006583_030 Hb_006583_030 Hb_005000_060--Hb_006583_030 Hb_050514_020 Hb_050514_020 Hb_005000_060--Hb_050514_020 Hb_001999_260--Hb_004208_090 Hb_006681_020 Hb_006681_020 Hb_001999_260--Hb_006681_020 Hb_001999_260--Hb_006583_030 Hb_004117_150 Hb_004117_150 Hb_001999_260--Hb_004117_150 Hb_000934_260 Hb_000934_260 Hb_001999_260--Hb_000934_260 Hb_001047_180 Hb_001047_180 Hb_000146_030--Hb_001047_180 Hb_004459_060 Hb_004459_060 Hb_000146_030--Hb_004459_060 Hb_002411_100 Hb_002411_100 Hb_000146_030--Hb_002411_100 Hb_000402_020 Hb_000402_020 Hb_000146_030--Hb_000402_020 Hb_004007_170 Hb_004007_170 Hb_000146_030--Hb_004007_170 Hb_000322_040 Hb_000322_040 Hb_000146_030--Hb_000322_040 Hb_000056_310 Hb_000056_310 Hb_148146_010--Hb_000056_310 Hb_000684_430 Hb_000684_430 Hb_148146_010--Hb_000684_430 Hb_005116_100 Hb_005116_100 Hb_148146_010--Hb_005116_100 Hb_001959_060 Hb_001959_060 Hb_148146_010--Hb_001959_060 Hb_004837_210 Hb_004837_210 Hb_148146_010--Hb_004837_210 Hb_002928_030 Hb_002928_030 Hb_148146_010--Hb_002928_030 Hb_004208_090--Hb_000934_260 Hb_004208_090--Hb_004117_150 Hb_004208_090--Hb_006681_020 Hb_004855_070 Hb_004855_070 Hb_004208_090--Hb_004855_070 Hb_000768_120 Hb_000768_120 Hb_004208_090--Hb_000768_120 Hb_006583_030--Hb_006681_020 Hb_006583_030--Hb_004855_070 Hb_000302_230 Hb_000302_230 Hb_006583_030--Hb_000302_230 Hb_006583_030--Hb_001047_180 Hb_010557_010 Hb_010557_010 Hb_006583_030--Hb_010557_010 Hb_003470_100 Hb_003470_100 Hb_050514_020--Hb_003470_100 Hb_050514_020--Hb_000934_260 Hb_050514_020--Hb_001999_260 Hb_009545_070 Hb_009545_070 Hb_050514_020--Hb_009545_070 Hb_000637_070 Hb_000637_070 Hb_050514_020--Hb_000637_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.78196 19.6107 102.939 24.2816 7.35145 7.14192
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.57649 12.5462 8.19588 4.24031 81.1936

CAGE analysis