Hb_009545_070

Information

Type -
Description -
Location Contig9545: 49484-50780
Sequence    

Annotation

kegg
ID pop:POPTR_0010s09620g
description POPTRDRAFT_769302; hypothetical protein
nr
ID XP_012069653.1
description PREDICTED: pentatricopeptide repeat-containing protein At4g14820 [Jatropha curcas]
swissprot
ID O23337
description Pentatricopeptide repeat-containing protein At4g14820 OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1
trembl
ID A0A067L6S3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02188 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009545_070 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14820 [Jatropha curcas]
2 Hb_001047_180 0.1216722297 - - conserved hypothetical protein [Ricinus communis]
3 Hb_006583_030 0.1219806836 - - PREDICTED: SPX and EXS domain-containing protein 1-like isoform X4 [Jatropha curcas]
4 Hb_050514_020 0.1239620473 - - PREDICTED: abscisic acid receptor PYL4 [Jatropha curcas]
5 Hb_003680_060 0.1259281902 - - hypothetical protein VITISV_022322 [Vitis vinifera]
6 Hb_000302_230 0.1259502085 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003470_100 0.1274382987 - - protein binding protein, putative [Ricinus communis]
8 Hb_000958_120 0.1361539433 - - PREDICTED: uncharacterized protein LOC105646385 [Jatropha curcas]
9 Hb_004855_070 0.1394674743 - - PLASTID-SPECIFIC RIBOSOMAL protein 4 [Populus trichocarpa]
10 Hb_003664_030 0.1442151468 - - PREDICTED: mitochondrial carnitine/acylcarnitine carrier-like protein [Jatropha curcas]
11 Hb_000322_030 0.1459344425 - - PREDICTED: uncharacterized protein LOC105637911 [Jatropha curcas]
12 Hb_000544_080 0.1479864594 - - PREDICTED: uncharacterized protein LOC105631062 isoform X3 [Jatropha curcas]
13 Hb_000390_210 0.1482515101 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
14 Hb_000834_060 0.149414554 - - PREDICTED: probable chlorophyll(ide) b reductase NYC1, chloroplastic isoform X1 [Jatropha curcas]
15 Hb_001999_260 0.1508544891 - - PREDICTED: 50S ribosomal protein L4, chloroplastic [Jatropha curcas]
16 Hb_010557_010 0.1510219946 - - PREDICTED: 50S ribosomal protein L3, chloroplastic [Jatropha curcas]
17 Hb_005074_050 0.1513234117 - - PREDICTED: myosin-6-like [Jatropha curcas]
18 Hb_000061_250 0.1534229356 - - hypothetical protein JCGZ_11665 [Jatropha curcas]
19 Hb_009393_130 0.1535020167 - - PREDICTED: uncharacterized protein LOC105638053 isoform X4 [Jatropha curcas]
20 Hb_002272_220 0.156760007 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_009545_070 Hb_009545_070 Hb_001047_180 Hb_001047_180 Hb_009545_070--Hb_001047_180 Hb_006583_030 Hb_006583_030 Hb_009545_070--Hb_006583_030 Hb_050514_020 Hb_050514_020 Hb_009545_070--Hb_050514_020 Hb_003680_060 Hb_003680_060 Hb_009545_070--Hb_003680_060 Hb_000302_230 Hb_000302_230 Hb_009545_070--Hb_000302_230 Hb_003470_100 Hb_003470_100 Hb_009545_070--Hb_003470_100 Hb_000146_030 Hb_000146_030 Hb_001047_180--Hb_000146_030 Hb_002411_100 Hb_002411_100 Hb_001047_180--Hb_002411_100 Hb_010557_010 Hb_010557_010 Hb_001047_180--Hb_010557_010 Hb_001047_180--Hb_006583_030 Hb_000703_070 Hb_000703_070 Hb_001047_180--Hb_000703_070 Hb_004007_170 Hb_004007_170 Hb_001047_180--Hb_004007_170 Hb_006681_020 Hb_006681_020 Hb_006583_030--Hb_006681_020 Hb_001999_260 Hb_001999_260 Hb_006583_030--Hb_001999_260 Hb_004855_070 Hb_004855_070 Hb_006583_030--Hb_004855_070 Hb_006583_030--Hb_000302_230 Hb_006583_030--Hb_010557_010 Hb_050514_020--Hb_003470_100 Hb_000934_260 Hb_000934_260 Hb_050514_020--Hb_000934_260 Hb_005000_060 Hb_005000_060 Hb_050514_020--Hb_005000_060 Hb_050514_020--Hb_001999_260 Hb_000637_070 Hb_000637_070 Hb_050514_020--Hb_000637_070 Hb_009393_130 Hb_009393_130 Hb_003680_060--Hb_009393_130 Hb_009838_070 Hb_009838_070 Hb_003680_060--Hb_009838_070 Hb_000116_220 Hb_000116_220 Hb_003680_060--Hb_000116_220 Hb_004650_050 Hb_004650_050 Hb_003680_060--Hb_004650_050 Hb_091433_050 Hb_091433_050 Hb_003680_060--Hb_091433_050 Hb_000711_030 Hb_000711_030 Hb_003680_060--Hb_000711_030 Hb_000009_510 Hb_000009_510 Hb_000302_230--Hb_000009_510 Hb_000393_040 Hb_000393_040 Hb_000302_230--Hb_000393_040 Hb_000302_230--Hb_006681_020 Hb_137216_010 Hb_137216_010 Hb_000302_230--Hb_137216_010 Hb_000302_230--Hb_003680_060 Hb_003470_100--Hb_004007_170 Hb_003470_100--Hb_004855_070 Hb_003470_100--Hb_001999_260 Hb_004208_090 Hb_004208_090 Hb_003470_100--Hb_004208_090 Hb_003470_100--Hb_001047_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.137452 0.750947 3.36247 1.17069 0.0324246 0.289188
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.297585 0.175475 0.105061 0.0949544 2.67988

CAGE analysis