Hb_009838_070

Information

Type -
Description -
Location Contig9838: 22977-25378
Sequence    

Annotation

kegg
ID rcu:RCOM_1217370
description ribonucleoprotein, chloroplast, putative
nr
ID XP_012077603.1
description PREDICTED: 28 kDa ribonucleoprotein, chloroplastic [Jatropha curcas]
swissprot
ID Q08935
description 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1
trembl
ID A0A067KAS6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12870 PE=4 SV=1
Gene Ontology
ID GO:0019013
description 28 kda chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64517: 23096-25351 , PASA_asmbl_64518: 23021-24618
cDNA
(Sanger)
(ID:Location)		 003_I22.ab1: 23021-24594 , 028_O10.ab1: 23078-23350 , 037_F08.ab1: 23021-24618

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009838_070 0.0 - - PREDICTED: 28 kDa ribonucleoprotein, chloroplastic [Jatropha curcas]
2 Hb_004650_050 0.0738683341 - - PREDICTED: uncharacterized protein At1g04910-like isoform X2 [Jatropha curcas]
3 Hb_000327_260 0.0807223377 - - conserved hypothetical protein [Ricinus communis]
4 Hb_009393_130 0.0816972979 - - PREDICTED: uncharacterized protein LOC105638053 isoform X4 [Jatropha curcas]
5 Hb_003680_060 0.0848151813 - - hypothetical protein VITISV_022322 [Vitis vinifera]
6 Hb_000711_030 0.0907802497 - - hypothetical protein POPTR_0019s02860g [Populus trichocarpa]
7 Hb_004096_210 0.0910562287 - - PREDICTED: uncharacterized protein LOC105638707 isoform X2 [Jatropha curcas]
8 Hb_000116_220 0.0945129743 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000134_040 0.0972792441 - - PREDICTED: 30S ribosomal protein 2, chloroplastic [Jatropha curcas]
10 Hb_019654_180 0.1064897353 - - glutathione-s-transferase theta, gst, putative [Ricinus communis]
11 Hb_000749_260 0.1094948816 - - PREDICTED: protochlorophyllide reductase, chloroplastic [Jatropha curcas]
12 Hb_000190_230 0.1100416499 - - PREDICTED: sulfate transporter 3.1-like [Jatropha curcas]
13 Hb_000020_090 0.1108931642 - - hypothetical protein JCGZ_09084 [Jatropha curcas]
14 Hb_000618_110 0.1114794533 - - hypothetical protein POPTR_0003s09870g [Populus trichocarpa]
15 Hb_002495_090 0.1165798679 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH48 isoform X2 [Jatropha curcas]
16 Hb_147378_010 0.1177427711 - - -
17 Hb_091433_050 0.1182020479 - - PREDICTED: uncharacterized protein LOC105646626 [Jatropha curcas]
18 Hb_000539_040 0.1182537729 - - PREDICTED: uncharacterized protein LOC105636110 isoform X1 [Jatropha curcas]
19 Hb_001729_030 0.1185733639 - - hypothetical protein VITISV_044457 [Vitis vinifera]
20 Hb_000832_270 0.1192741846 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_009838_070 Hb_009838_070 Hb_004650_050 Hb_004650_050 Hb_009838_070--Hb_004650_050 Hb_000327_260 Hb_000327_260 Hb_009838_070--Hb_000327_260 Hb_009393_130 Hb_009393_130 Hb_009838_070--Hb_009393_130 Hb_003680_060 Hb_003680_060 Hb_009838_070--Hb_003680_060 Hb_000711_030 Hb_000711_030 Hb_009838_070--Hb_000711_030 Hb_004096_210 Hb_004096_210 Hb_009838_070--Hb_004096_210 Hb_004650_050--Hb_000711_030 Hb_091433_050 Hb_091433_050 Hb_004650_050--Hb_091433_050 Hb_004650_050--Hb_003680_060 Hb_004650_050--Hb_009393_130 Hb_004650_050--Hb_004096_210 Hb_000539_040 Hb_000539_040 Hb_000327_260--Hb_000539_040 Hb_000327_260--Hb_009393_130 Hb_000116_220 Hb_000116_220 Hb_000327_260--Hb_000116_220 Hb_000327_260--Hb_004096_210 Hb_000832_270 Hb_000832_270 Hb_000327_260--Hb_000832_270 Hb_009393_130--Hb_003680_060 Hb_007803_040 Hb_007803_040 Hb_009393_130--Hb_007803_040 Hb_003605_060 Hb_003605_060 Hb_009393_130--Hb_003605_060 Hb_010557_010 Hb_010557_010 Hb_009393_130--Hb_010557_010 Hb_002811_250 Hb_002811_250 Hb_009393_130--Hb_002811_250 Hb_003680_060--Hb_000116_220 Hb_003680_060--Hb_091433_050 Hb_003680_060--Hb_000711_030 Hb_001159_070 Hb_001159_070 Hb_000711_030--Hb_001159_070 Hb_000950_020 Hb_000950_020 Hb_000711_030--Hb_000950_020 Hb_000711_030--Hb_000327_260 Hb_005000_110 Hb_005000_110 Hb_000711_030--Hb_005000_110 Hb_000618_110 Hb_000618_110 Hb_004096_210--Hb_000618_110 Hb_004096_210--Hb_009393_130 Hb_000866_020 Hb_000866_020 Hb_004096_210--Hb_000866_020 Hb_000816_240 Hb_000816_240 Hb_004096_210--Hb_000816_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.795546 3.27793 32.7341 20.535 0.888309 0.94734
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.807774 1.74755 0.496185 1.49161 37.451

CAGE analysis