Hb_002811_250

Information

Type -
Description -
Location Contig2811: 198757-199398
Sequence    

Annotation

kegg
ID rcu:RCOM_1427780
description ribose-5-phosphate isomerase, putative (EC:5.3.1.6)
nr
ID XP_012089244.1
description PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Jatropha curcas]
swissprot
ID Q9S726
description Probable ribose-5-phosphate isomerase 3, chloroplastic OS=Arabidopsis thaliana GN=RPI3 PE=1 SV=1
trembl
ID A0A067JI71
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23484 PE=3 SV=1
Gene Ontology
ID GO:0004751
description probable ribose-5-phosphate isomerase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29422: 197513-199566
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002811_250 0.0 - - PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Jatropha curcas]
2 Hb_000193_220 0.0683166554 - - PREDICTED: ribulose-phosphate 3-epimerase, chloroplastic [Jatropha curcas]
3 Hb_010557_010 0.070915222 - - PREDICTED: 50S ribosomal protein L3, chloroplastic [Jatropha curcas]
4 Hb_000803_170 0.0719454982 - - PREDICTED: uncharacterized protein LOC105648312 [Jatropha curcas]
5 Hb_005181_120 0.0737902328 - - PREDICTED: psbB mRNA maturation factor Mbb1, chloroplastic isoform X1 [Jatropha curcas]
6 Hb_010098_040 0.0752173264 - - PREDICTED: DNA-binding protein SMUBP-2 [Jatropha curcas]
7 Hb_000679_080 0.0752839945 - - PREDICTED: lactation elevated protein 1 isoform X1 [Jatropha curcas]
8 Hb_010721_020 0.0784679677 - - PREDICTED: photosynthetic NDH subunit of lumenal location 4, chloroplastic [Jatropha curcas]
9 Hb_000045_050 0.0847400416 - - PREDICTED: probable zinc metalloprotease EGY2, chloroplastic [Jatropha curcas]
10 Hb_009393_130 0.0863750436 - - PREDICTED: uncharacterized protein LOC105638053 isoform X4 [Jatropha curcas]
11 Hb_000684_200 0.0919629761 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
12 Hb_005488_190 0.0927398791 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
13 Hb_172426_060 0.0942293268 - - PREDICTED: protein BREAST CANCER SUSCEPTIBILITY 1 homolog [Jatropha curcas]
14 Hb_003605_060 0.0952675813 - - PREDICTED: ATP synthase subunit delta, chloroplastic [Jatropha curcas]
15 Hb_007803_040 0.0971054102 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP37, chloroplastic [Jatropha curcas]
16 Hb_000703_070 0.0981705583 - - PREDICTED: uncharacterized protein LOC105635704 isoform X1 [Jatropha curcas]
17 Hb_002485_050 0.0993109691 - - PREDICTED: probable plastid-lipid-associated protein 12, chloroplastic [Jatropha curcas]
18 Hb_000089_140 0.0997959964 - - PREDICTED: uncharacterized protein LOC105636682 isoform X2 [Jatropha curcas]
19 Hb_142663_020 0.1002348992 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
20 Hb_007982_040 0.1007577631 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_002811_250 Hb_002811_250 Hb_000193_220 Hb_000193_220 Hb_002811_250--Hb_000193_220 Hb_010557_010 Hb_010557_010 Hb_002811_250--Hb_010557_010 Hb_000803_170 Hb_000803_170 Hb_002811_250--Hb_000803_170 Hb_005181_120 Hb_005181_120 Hb_002811_250--Hb_005181_120 Hb_010098_040 Hb_010098_040 Hb_002811_250--Hb_010098_040 Hb_000679_080 Hb_000679_080 Hb_002811_250--Hb_000679_080 Hb_010721_020 Hb_010721_020 Hb_000193_220--Hb_010721_020 Hb_000193_220--Hb_000803_170 Hb_007982_040 Hb_007982_040 Hb_000193_220--Hb_007982_040 Hb_000118_090 Hb_000118_090 Hb_000193_220--Hb_000118_090 Hb_000966_040 Hb_000966_040 Hb_000193_220--Hb_000966_040 Hb_002411_100 Hb_002411_100 Hb_010557_010--Hb_002411_100 Hb_000703_070 Hb_000703_070 Hb_010557_010--Hb_000703_070 Hb_010557_010--Hb_000803_170 Hb_009393_130 Hb_009393_130 Hb_010557_010--Hb_009393_130 Hb_000045_050 Hb_000045_050 Hb_010557_010--Hb_000045_050 Hb_005563_040 Hb_005563_040 Hb_000803_170--Hb_005563_040 Hb_000089_140 Hb_000089_140 Hb_000803_170--Hb_000089_140 Hb_001579_280 Hb_001579_280 Hb_000803_170--Hb_001579_280 Hb_005181_120--Hb_010098_040 Hb_000516_080 Hb_000516_080 Hb_005181_120--Hb_000516_080 Hb_005181_120--Hb_000679_080 Hb_005181_120--Hb_007982_040 Hb_000108_150 Hb_000108_150 Hb_005181_120--Hb_000108_150 Hb_010098_040--Hb_000516_080 Hb_010098_040--Hb_007982_040 Hb_010098_040--Hb_000679_080 Hb_000684_200 Hb_000684_200 Hb_010098_040--Hb_000684_200 Hb_003416_020 Hb_003416_020 Hb_000679_080--Hb_003416_020 Hb_000679_080--Hb_000516_080 Hb_000679_080--Hb_007982_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.74086 15.586 93.8931 41.5348 4.81948 6.41865
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.48696 6.97244 5.45712 14.155 145.879

CAGE analysis