Hb_003416_020

Information

Type -
Description -
Location Contig3416: 33241-35046
Sequence    

Annotation

kegg
ID pop:POPTR_0001s01780g
description pentatricopeptide repeat-containing family protein
nr
ID XP_006368339.1
description pentatricopeptide repeat-containing family protein [Populus trichocarpa]
swissprot
ID Q9C6T2
description Pentatricopeptide repeat-containing protein At1g31920 OS=Arabidopsis thaliana GN=PCMP-H11 PE=2 SV=1
trembl
ID U5GMW9
description Pentatricopeptide repeat-containing family protein OS=Populus trichocarpa GN=POPTR_0001s01780g PE=4 SV=1
Gene Ontology
ID GO:0008568
description pentatricopeptide repeat-containing protein at1g31920

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003416_020 0.0 - - pentatricopeptide repeat-containing family protein [Populus trichocarpa]
2 Hb_000679_080 0.0936988104 - - PREDICTED: lactation elevated protein 1 isoform X1 [Jatropha curcas]
3 Hb_002662_110 0.0985670369 - - Kinesin heavy chain, putative [Ricinus communis]
4 Hb_126933_020 0.1044487492 - - PREDICTED: uncharacterized protein LOC105638525 [Jatropha curcas]
5 Hb_093077_010 0.1099039559 transcription factor TF Family: G2-like PREDICTED: two-component response regulator-like APRR2 isoform X1 [Jatropha curcas]
6 Hb_000283_030 0.1102726191 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA16-like [Populus euphratica]
7 Hb_007765_130 0.1152503423 - - PREDICTED: UPF0503 protein At3g09070, chloroplastic [Jatropha curcas]
8 Hb_001365_030 0.1169351711 - - PREDICTED: uncharacterized protein LOC102609547 [Citrus sinensis]
9 Hb_000922_160 0.1191215681 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose 5-phosphate reductoisomerase putative 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Hevea brasiliensis]
10 Hb_000948_120 0.1192135717 - - PREDICTED: uncharacterized protein LOC105634688 isoform X1 [Jatropha curcas]
11 Hb_001227_140 0.1208074673 - - PREDICTED: protein ROS1 [Jatropha curcas]
12 Hb_003141_060 0.1274709673 transcription factor TF Family: TRAF PREDICTED: ETO1-like protein 1 [Jatropha curcas]
13 Hb_000891_010 0.1275692662 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000327_260 0.1294178885 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003915_020 0.1299036642 - - PREDICTED: outer envelope pore protein 37, chloroplastic [Jatropha curcas]
16 Hb_172426_060 0.131905197 - - PREDICTED: protein BREAST CANCER SUSCEPTIBILITY 1 homolog [Jatropha curcas]
17 Hb_000976_400 0.1332275352 - - synaptotagmin, putative [Ricinus communis]
18 Hb_003055_070 0.1340820039 - - PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1 [Jatropha curcas]
19 Hb_003177_050 0.1342274567 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1-like [Populus euphratica]
20 Hb_000134_040 0.1347602404 - - PREDICTED: 30S ribosomal protein 2, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_003416_020 Hb_003416_020 Hb_000679_080 Hb_000679_080 Hb_003416_020--Hb_000679_080 Hb_002662_110 Hb_002662_110 Hb_003416_020--Hb_002662_110 Hb_126933_020 Hb_126933_020 Hb_003416_020--Hb_126933_020 Hb_093077_010 Hb_093077_010 Hb_003416_020--Hb_093077_010 Hb_000283_030 Hb_000283_030 Hb_003416_020--Hb_000283_030 Hb_007765_130 Hb_007765_130 Hb_003416_020--Hb_007765_130 Hb_005181_120 Hb_005181_120 Hb_000679_080--Hb_005181_120 Hb_002811_250 Hb_002811_250 Hb_000679_080--Hb_002811_250 Hb_010098_040 Hb_010098_040 Hb_000679_080--Hb_010098_040 Hb_000516_080 Hb_000516_080 Hb_000679_080--Hb_000516_080 Hb_007982_040 Hb_007982_040 Hb_000679_080--Hb_007982_040 Hb_004994_330 Hb_004994_330 Hb_002662_110--Hb_004994_330 Hb_005276_070 Hb_005276_070 Hb_002662_110--Hb_005276_070 Hb_000612_090 Hb_000612_090 Hb_002662_110--Hb_000612_090 Hb_002662_110--Hb_000679_080 Hb_032631_030 Hb_032631_030 Hb_002662_110--Hb_032631_030 Hb_004855_070 Hb_004855_070 Hb_126933_020--Hb_004855_070 Hb_005488_190 Hb_005488_190 Hb_126933_020--Hb_005488_190 Hb_150651_020 Hb_150651_020 Hb_126933_020--Hb_150651_020 Hb_004208_090 Hb_004208_090 Hb_126933_020--Hb_004208_090 Hb_001365_030 Hb_001365_030 Hb_126933_020--Hb_001365_030 Hb_000922_160 Hb_000922_160 Hb_093077_010--Hb_000922_160 Hb_006478_050 Hb_006478_050 Hb_093077_010--Hb_006478_050 Hb_000891_010 Hb_000891_010 Hb_093077_010--Hb_000891_010 Hb_000917_200 Hb_000917_200 Hb_093077_010--Hb_000917_200 Hb_001775_120 Hb_001775_120 Hb_093077_010--Hb_001775_120 Hb_103474_010 Hb_103474_010 Hb_000283_030--Hb_103474_010 Hb_000392_260 Hb_000392_260 Hb_000283_030--Hb_000392_260 Hb_000976_400 Hb_000976_400 Hb_000283_030--Hb_000976_400 Hb_006816_250 Hb_006816_250 Hb_000283_030--Hb_006816_250 Hb_001517_070 Hb_001517_070 Hb_000283_030--Hb_001517_070 Hb_000042_050 Hb_000042_050 Hb_007765_130--Hb_000042_050 Hb_003055_070 Hb_003055_070 Hb_007765_130--Hb_003055_070 Hb_007765_130--Hb_001365_030 Hb_000005_100 Hb_000005_100 Hb_007765_130--Hb_000005_100 Hb_007765_130--Hb_000679_080 Hb_000093_140 Hb_000093_140 Hb_007765_130--Hb_000093_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.52142 3.26606 16.3517 8.98697 0.7883 1.18091
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.126448 0.278569 0.413845 3.30448 16.9345

CAGE analysis