Hb_000891_010

Information

Type -
Description -
Location Contig891: 4144-10195
Sequence    

Annotation

kegg
ID rcu:RCOM_1186680
description hypothetical protein
nr
ID XP_002527453.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SJQ6
description Protein ROS1 OS=Arabidopsis thaliana GN=ROS1 PE=1 SV=2
trembl
ID B9SN84
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1186680 PE=4 SV=1
Gene Ontology
ID GO:0006281
description protein ros1 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61638: 4554-5687 , PASA_asmbl_61639: 5762-6963 , PASA_asmbl_61641: 7587-8547 , PASA_asmbl_61643: 9049-10352 , PASA_asmbl_61644: 9406-10324
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000891_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000922_160 0.1048630435 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose 5-phosphate reductoisomerase putative 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Hevea brasiliensis]
3 Hb_006478_050 0.1082690562 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Jatropha curcas]
4 Hb_001775_120 0.111618853 - - PREDICTED: nucleobase-ascorbate transporter 12 [Jatropha curcas]
5 Hb_093077_010 0.1169949945 transcription factor TF Family: G2-like PREDICTED: two-component response regulator-like APRR2 isoform X1 [Jatropha curcas]
6 Hb_002890_160 0.1217244854 - - PREDICTED: protein root UVB sensitive 6 isoform X1 [Jatropha curcas]
7 Hb_001936_190 0.1240348964 - - hypothetical protein JCGZ_17780 [Jatropha curcas]
8 Hb_000917_200 0.1267215123 - - hypothetical protein PRUPE_ppa010555mg [Prunus persica]
9 Hb_003416_020 0.1275692662 - - pentatricopeptide repeat-containing family protein [Populus trichocarpa]
10 Hb_004531_170 0.1301041225 - - PREDICTED: probable inactive nicotinamidase At3g16190 [Jatropha curcas]
11 Hb_000049_280 0.1302750785 - - PREDICTED: ribokinase-like isoform X4 [Jatropha curcas]
12 Hb_000635_050 0.13331944 - - PREDICTED: F-box/kelch-repeat protein At1g67480 [Jatropha curcas]
13 Hb_007765_130 0.133964805 - - PREDICTED: UPF0503 protein At3g09070, chloroplastic [Jatropha curcas]
14 Hb_000062_050 0.1352977947 - - protein binding protein, putative [Ricinus communis]
15 Hb_003055_070 0.1355125187 - - PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1 [Jatropha curcas]
16 Hb_001227_140 0.1396283483 - - PREDICTED: protein ROS1 [Jatropha curcas]
17 Hb_000853_050 0.1428676185 - - PREDICTED: putative GTP diphosphokinase RSH1, chloroplastic isoform X1 [Jatropha curcas]
18 Hb_002838_010 0.1445895313 - - AGPase large subunit protein [Hevea brasiliensis]
19 Hb_005999_020 0.1461122437 transcription factor TF Family: C2H2 PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like [Jatropha curcas]
20 Hb_000181_330 0.1462727779 - - ubiquitin ligase protein cop1, putative [Ricinus communis]

Gene co-expression network

sample Hb_000891_010 Hb_000891_010 Hb_000922_160 Hb_000922_160 Hb_000891_010--Hb_000922_160 Hb_006478_050 Hb_006478_050 Hb_000891_010--Hb_006478_050 Hb_001775_120 Hb_001775_120 Hb_000891_010--Hb_001775_120 Hb_093077_010 Hb_093077_010 Hb_000891_010--Hb_093077_010 Hb_002890_160 Hb_002890_160 Hb_000891_010--Hb_002890_160 Hb_001936_190 Hb_001936_190 Hb_000891_010--Hb_001936_190 Hb_070136_010 Hb_070136_010 Hb_000922_160--Hb_070136_010 Hb_002635_020 Hb_002635_020 Hb_000922_160--Hb_002635_020 Hb_000922_160--Hb_001936_190 Hb_000922_160--Hb_006478_050 Hb_000922_160--Hb_002890_160 Hb_000922_160--Hb_093077_010 Hb_001629_120 Hb_001629_120 Hb_006478_050--Hb_001629_120 Hb_000037_200 Hb_000037_200 Hb_006478_050--Hb_000037_200 Hb_006478_050--Hb_002890_160 Hb_000260_410 Hb_000260_410 Hb_006478_050--Hb_000260_410 Hb_001352_030 Hb_001352_030 Hb_006478_050--Hb_001352_030 Hb_001104_150 Hb_001104_150 Hb_001775_120--Hb_001104_150 Hb_000207_350 Hb_000207_350 Hb_001775_120--Hb_000207_350 Hb_001775_120--Hb_000922_160 Hb_031385_010 Hb_031385_010 Hb_001775_120--Hb_031385_010 Hb_004855_020 Hb_004855_020 Hb_001775_120--Hb_004855_020 Hb_003416_020 Hb_003416_020 Hb_093077_010--Hb_003416_020 Hb_093077_010--Hb_006478_050 Hb_000917_200 Hb_000917_200 Hb_093077_010--Hb_000917_200 Hb_093077_010--Hb_001775_120 Hb_003531_050 Hb_003531_050 Hb_002890_160--Hb_003531_050 Hb_002890_160--Hb_001352_030 Hb_003020_070 Hb_003020_070 Hb_002890_160--Hb_003020_070 Hb_010534_040 Hb_010534_040 Hb_002890_160--Hb_010534_040 Hb_002890_160--Hb_000037_200 Hb_028008_040 Hb_028008_040 Hb_001936_190--Hb_028008_040 Hb_005725_240 Hb_005725_240 Hb_001936_190--Hb_005725_240 Hb_004531_170 Hb_004531_170 Hb_001936_190--Hb_004531_170 Hb_003580_050 Hb_003580_050 Hb_001936_190--Hb_003580_050 Hb_005365_010 Hb_005365_010 Hb_001936_190--Hb_005365_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.497619 2.13891 5.03046 2.94532 0.196006 0.128753
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0242563 0.0190886 0.109828 1.13463 4.98281

CAGE analysis