Hb_002635_020

Information

Type -
Description -
Location Contig2635: 90428-93982
Sequence    

Annotation

kegg
ID tcc:TCM_039134
description Homogentisate geranylgeranyl transferase isoform 1
nr
ID XP_006372081.1
description hypothetical protein POPTR_0018s09790g [Populus trichocarpa]
swissprot
ID Q8VWJ1
description Homogentisate phytyltransferase 1, chloroplastic OS=Arabidopsis thaliana GN=HPT1 PE=1 SV=1
trembl
ID U5FFQ5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s09790g PE=4 SV=1
Gene Ontology
ID GO:0016021
description homogentisate phytyltransferase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27500: 72284-94931
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002635_020 0.0 - - hypothetical protein POPTR_0018s09790g [Populus trichocarpa]
2 Hb_002601_140 0.0888718226 - - signal transducer, putative [Ricinus communis]
3 Hb_000922_160 0.0924896283 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose 5-phosphate reductoisomerase putative 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Hevea brasiliensis]
4 Hb_002078_320 0.093929581 - - PREDICTED: glucuronoxylan 4-O-methyltransferase 1 [Jatropha curcas]
5 Hb_000162_200 0.0960822444 - - PREDICTED: uncharacterized protein LOC105641759 isoform X2 [Jatropha curcas]
6 Hb_004162_320 0.097857969 - - PREDICTED: uncharacterized protein LOC105628009 isoform X1 [Jatropha curcas]
7 Hb_003506_010 0.0996115667 - - hypothetical protein JCGZ_01146 [Jatropha curcas]
8 Hb_003607_140 0.1008438932 - - 3-ketoacyl-CoA thiolase B, putative [Ricinus communis]
9 Hb_000318_010 0.1013264128 - - calcium-dependent protein kinase 6 [Hevea brasiliensis]
10 Hb_000694_050 0.1056102525 - - Nuclease PA3, putative [Ricinus communis]
11 Hb_010174_180 0.1058584935 - - protein binding protein, putative [Ricinus communis]
12 Hb_070136_010 0.10755735 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
13 Hb_119066_010 0.112200713 - - PREDICTED: uncharacterized protein LOC105641552 [Jatropha curcas]
14 Hb_000901_010 0.1142635199 - - PREDICTED: putative G-type lectin S-receptor-like serine/threonine-protein kinase At1g61610 [Jatropha curcas]
15 Hb_001135_010 0.1144412185 - - hypothetical protein CICLE_v10024612mg [Citrus clementina]
16 Hb_146901_010 0.1184615872 - - LRR receptor-like serine/threonine-protein kinase, putative [Theobroma cacao]
17 Hb_000416_090 0.1185735156 - - Aquaporin NIP1.1, putative [Ricinus communis]
18 Hb_020805_070 0.1202097549 - - PREDICTED: MLO protein homolog 1-like [Jatropha curcas]
19 Hb_000594_140 0.122243039 - - PREDICTED: probable galacturonosyltransferase-like 3 [Jatropha curcas]
20 Hb_144449_010 0.1232484584 - - Potassium transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_002635_020 Hb_002635_020 Hb_002601_140 Hb_002601_140 Hb_002635_020--Hb_002601_140 Hb_000922_160 Hb_000922_160 Hb_002635_020--Hb_000922_160 Hb_002078_320 Hb_002078_320 Hb_002635_020--Hb_002078_320 Hb_000162_200 Hb_000162_200 Hb_002635_020--Hb_000162_200 Hb_004162_320 Hb_004162_320 Hb_002635_020--Hb_004162_320 Hb_003506_010 Hb_003506_010 Hb_002635_020--Hb_003506_010 Hb_000260_750 Hb_000260_750 Hb_002601_140--Hb_000260_750 Hb_002601_140--Hb_002078_320 Hb_000987_020 Hb_000987_020 Hb_002601_140--Hb_000987_020 Hb_000694_050 Hb_000694_050 Hb_002601_140--Hb_000694_050 Hb_000901_010 Hb_000901_010 Hb_002601_140--Hb_000901_010 Hb_070136_010 Hb_070136_010 Hb_000922_160--Hb_070136_010 Hb_001936_190 Hb_001936_190 Hb_000922_160--Hb_001936_190 Hb_006478_050 Hb_006478_050 Hb_000922_160--Hb_006478_050 Hb_002890_160 Hb_002890_160 Hb_000922_160--Hb_002890_160 Hb_093077_010 Hb_093077_010 Hb_000922_160--Hb_093077_010 Hb_002078_320--Hb_003506_010 Hb_002078_320--Hb_004162_320 Hb_002078_320--Hb_000901_010 Hb_002078_320--Hb_000987_020 Hb_000185_170 Hb_000185_170 Hb_002078_320--Hb_000185_170 Hb_020805_070 Hb_020805_070 Hb_002078_320--Hb_020805_070 Hb_000318_010 Hb_000318_010 Hb_000162_200--Hb_000318_010 Hb_000162_200--Hb_003506_010 Hb_000162_200--Hb_004162_320 Hb_000977_030 Hb_000977_030 Hb_000162_200--Hb_000977_030 Hb_005892_040 Hb_005892_040 Hb_000162_200--Hb_005892_040 Hb_007894_080 Hb_007894_080 Hb_000162_200--Hb_007894_080 Hb_004162_320--Hb_003506_010 Hb_004162_320--Hb_005892_040 Hb_004162_320--Hb_020805_070 Hb_001405_040 Hb_001405_040 Hb_004162_320--Hb_001405_040 Hb_003506_010--Hb_005892_040 Hb_003506_010--Hb_020805_070 Hb_004855_080 Hb_004855_080 Hb_003506_010--Hb_004855_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.61356 13.1538 35.6782 28.954 0.789952 0.682561
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.593301 0.233027 0 18.9083 37.8001

CAGE analysis