Hb_070136_010

Information

Type -
Description -
Location Contig70136: 171-1174
Sequence    

Annotation

kegg
ID rcu:RCOM_0275570
description TRANSPARENT TESTA 12 protein, putative
nr
ID XP_002532232.1
description TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
swissprot
ID Q8GXM8
description MATE efflux family protein 7 OS=Arabidopsis thaliana GN=DTXL3 PE=2 SV=1
trembl
ID B9T1W3
description MATE efflux family protein OS=Ricinus communis GN=RCOM_0275570 PE=3 SV=1
Gene Ontology
ID GO:0016020
description transparent testa 12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_070136_010 0.0 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
2 Hb_000185_170 0.0637706596 - - ATP binding protein, putative [Ricinus communis]
3 Hb_000922_160 0.0896212829 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose 5-phosphate reductoisomerase putative 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Hevea brasiliensis]
4 Hb_002078_320 0.0906655104 - - PREDICTED: glucuronoxylan 4-O-methyltransferase 1 [Jatropha curcas]
5 Hb_119066_010 0.0955229102 - - PREDICTED: uncharacterized protein LOC105641552 [Jatropha curcas]
6 Hb_000037_200 0.1019611922 - - RNA binding protein, putative [Ricinus communis]
7 Hb_001629_120 0.1024663378 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At4g27220 isoform X2 [Populus euphratica]
8 Hb_002635_020 0.10755735 - - hypothetical protein POPTR_0018s09790g [Populus trichocarpa]
9 Hb_044653_050 0.1078191179 - - PREDICTED: CTL-like protein DDB_G0274487 isoform X1 [Jatropha curcas]
10 Hb_000173_270 0.1109959455 - - PREDICTED: mitogen-activated protein kinase 15 isoform X2 [Jatropha curcas]
11 Hb_005365_010 0.1110438846 - - PREDICTED: serine carboxypeptidase-like 20 [Jatropha curcas]
12 Hb_000987_020 0.1114572532 - - PREDICTED: protein trichome birefringence-like 35 [Jatropha curcas]
13 Hb_000990_040 0.1121624702 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 7 [Jatropha curcas]
14 Hb_000062_050 0.1127956499 - - protein binding protein, putative [Ricinus communis]
15 Hb_000265_170 0.1136735884 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like isoform X1 [Populus euphratica]
16 Hb_000694_050 0.1147086962 - - Nuclease PA3, putative [Ricinus communis]
17 Hb_003506_010 0.1168126326 - - hypothetical protein JCGZ_01146 [Jatropha curcas]
18 Hb_002890_160 0.1169806078 - - PREDICTED: protein root UVB sensitive 6 isoform X1 [Jatropha curcas]
19 Hb_003531_050 0.1172575536 - - PREDICTED: pyridoxal reductase, chloroplastic [Jatropha curcas]
20 Hb_001352_030 0.1181612872 - - PREDICTED: uncharacterized protein LOC105636310 [Jatropha curcas]

Gene co-expression network

sample Hb_070136_010 Hb_070136_010 Hb_000185_170 Hb_000185_170 Hb_070136_010--Hb_000185_170 Hb_000922_160 Hb_000922_160 Hb_070136_010--Hb_000922_160 Hb_002078_320 Hb_002078_320 Hb_070136_010--Hb_002078_320 Hb_119066_010 Hb_119066_010 Hb_070136_010--Hb_119066_010 Hb_000037_200 Hb_000037_200 Hb_070136_010--Hb_000037_200 Hb_001629_120 Hb_001629_120 Hb_070136_010--Hb_001629_120 Hb_000185_170--Hb_000037_200 Hb_000185_170--Hb_002078_320 Hb_000987_020 Hb_000987_020 Hb_000185_170--Hb_000987_020 Hb_000185_170--Hb_001629_120 Hb_000265_170 Hb_000265_170 Hb_000185_170--Hb_000265_170 Hb_002635_020 Hb_002635_020 Hb_000922_160--Hb_002635_020 Hb_001936_190 Hb_001936_190 Hb_000922_160--Hb_001936_190 Hb_006478_050 Hb_006478_050 Hb_000922_160--Hb_006478_050 Hb_002890_160 Hb_002890_160 Hb_000922_160--Hb_002890_160 Hb_093077_010 Hb_093077_010 Hb_000922_160--Hb_093077_010 Hb_003506_010 Hb_003506_010 Hb_002078_320--Hb_003506_010 Hb_004162_320 Hb_004162_320 Hb_002078_320--Hb_004162_320 Hb_000901_010 Hb_000901_010 Hb_002078_320--Hb_000901_010 Hb_002078_320--Hb_000987_020 Hb_020805_070 Hb_020805_070 Hb_002078_320--Hb_020805_070 Hb_002871_110 Hb_002871_110 Hb_119066_010--Hb_002871_110 Hb_006970_170 Hb_006970_170 Hb_119066_010--Hb_006970_170 Hb_119066_010--Hb_002078_320 Hb_119066_010--Hb_002635_020 Hb_146901_010 Hb_146901_010 Hb_119066_010--Hb_146901_010 Hb_000062_050 Hb_000062_050 Hb_000037_200--Hb_000062_050 Hb_078582_010 Hb_078582_010 Hb_000037_200--Hb_078582_010 Hb_000023_130 Hb_000023_130 Hb_000037_200--Hb_000023_130 Hb_000037_200--Hb_000987_020 Hb_000037_200--Hb_002890_160 Hb_005365_010 Hb_005365_010 Hb_001629_120--Hb_005365_010 Hb_000173_270 Hb_000173_270 Hb_001629_120--Hb_000173_270 Hb_000818_090 Hb_000818_090 Hb_001629_120--Hb_000818_090 Hb_001629_120--Hb_000023_130 Hb_001051_010 Hb_001051_010 Hb_001629_120--Hb_001051_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.452201 24.2703 66.626 36.5937 0.159926 0.249971
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.81076 0.224718 0 19.3093 49.4415

CAGE analysis