Hb_001051_010

Information

Type -
Description -
Location Contig1051: 4947-8704
Sequence    

Annotation

kegg
ID tcc:TCM_042082
description Cyclic nucleotide-gated channel 15
nr
ID XP_012064795.1
description PREDICTED: putative cyclic nucleotide-gated ion channel 15 [Jatropha curcas]
swissprot
ID Q9SL29
description Putative cyclic nucleotide-gated ion channel 15 OS=Arabidopsis thaliana GN=CNGC15 PE=3 SV=1
trembl
ID A0A061H096
description Cyclic nucleotide-gated channel 15 OS=Theobroma cacao GN=TCM_042082 PE=4 SV=1
Gene Ontology
ID GO:0005249
description cyclic nucleotide-gated ion channel 15

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01721: 8638-8770
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001051_010 0.0 - - PREDICTED: putative cyclic nucleotide-gated ion channel 15 [Jatropha curcas]
2 Hb_000608_290 0.0567082747 - - thioredoxin f-type, putative [Ricinus communis]
3 Hb_018591_020 0.0790578654 - - Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplast precursor, putative [Ricinus communis]
4 Hb_000627_050 0.0812192771 - - PREDICTED: uncharacterized protein LOC105632845 [Jatropha curcas]
5 Hb_000023_130 0.0830887178 - - Metal-nicotianamine transporter YSL1 [Glycine soja]
6 Hb_002073_150 0.0831033591 transcription factor TF Family: MYB-related PREDICTED: transcription factor MYB1R1 [Jatropha curcas]
7 Hb_000140_460 0.0835746606 - - PREDICTED: uncharacterized protein LOC105628417 [Jatropha curcas]
8 Hb_001248_070 0.0844091719 - - PREDICTED: probable polyamine transporter At3g19553 [Jatropha curcas]
9 Hb_069696_020 0.088409995 - - PREDICTED: protochlorophyllide-dependent translocon component 52, chloroplastic-like isoform X2 [Jatropha curcas]
10 Hb_001629_120 0.0892451924 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At4g27220 isoform X2 [Populus euphratica]
11 Hb_000046_120 0.0901881164 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase putative 1-deoxy-D-xylulose 5-phosphate synthase [Hevea brasiliensis]
12 Hb_011104_020 0.0910004823 - - PREDICTED: ABC transporter B family member 2-like [Jatropha curcas]
13 Hb_003435_030 0.0923421 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
14 Hb_001321_010 0.0925328182 - - HIGH-CHLOROPHYLL-FLUORESCENCE 101 family protein [Populus trichocarpa]
15 Hb_004994_030 0.0927831206 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 [Jatropha curcas]
16 Hb_010136_010 0.0930116829 - - Putative receptor-like protein kinase [Glycine soja]
17 Hb_002407_090 0.0946448201 - - hypothetical protein JCGZ_00747 [Jatropha curcas]
18 Hb_000212_410 0.0960325162 - - PREDICTED: serine carboxypeptidase 1-like [Jatropha curcas]
19 Hb_007718_030 0.0962339056 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
20 Hb_000486_020 0.0979776892 - - PREDICTED: L-type lectin-domain containing receptor kinase VIII.2 [Jatropha curcas]

Gene co-expression network

sample Hb_001051_010 Hb_001051_010 Hb_000608_290 Hb_000608_290 Hb_001051_010--Hb_000608_290 Hb_018591_020 Hb_018591_020 Hb_001051_010--Hb_018591_020 Hb_000627_050 Hb_000627_050 Hb_001051_010--Hb_000627_050 Hb_000023_130 Hb_000023_130 Hb_001051_010--Hb_000023_130 Hb_002073_150 Hb_002073_150 Hb_001051_010--Hb_002073_150 Hb_000140_460 Hb_000140_460 Hb_001051_010--Hb_000140_460 Hb_001248_070 Hb_001248_070 Hb_000608_290--Hb_001248_070 Hb_000608_290--Hb_018591_020 Hb_002407_090 Hb_002407_090 Hb_000608_290--Hb_002407_090 Hb_000608_290--Hb_002073_150 Hb_011104_020 Hb_011104_020 Hb_000608_290--Hb_011104_020 Hb_002007_220 Hb_002007_220 Hb_018591_020--Hb_002007_220 Hb_000046_120 Hb_000046_120 Hb_018591_020--Hb_000046_120 Hb_033363_040 Hb_033363_040 Hb_018591_020--Hb_033363_040 Hb_025557_060 Hb_025557_060 Hb_018591_020--Hb_025557_060 Hb_000002_500 Hb_000002_500 Hb_018591_020--Hb_000002_500 Hb_000212_410 Hb_000212_410 Hb_000627_050--Hb_000212_410 Hb_000703_120 Hb_000703_120 Hb_000627_050--Hb_000703_120 Hb_009788_020 Hb_009788_020 Hb_000627_050--Hb_009788_020 Hb_007270_020 Hb_007270_020 Hb_000627_050--Hb_007270_020 Hb_069696_020 Hb_069696_020 Hb_000627_050--Hb_069696_020 Hb_000977_020 Hb_000977_020 Hb_000627_050--Hb_000977_020 Hb_000759_040 Hb_000759_040 Hb_000023_130--Hb_000759_040 Hb_132356_010 Hb_132356_010 Hb_000023_130--Hb_132356_010 Hb_000023_130--Hb_009788_020 Hb_000037_200 Hb_000037_200 Hb_000023_130--Hb_000037_200 Hb_001629_120 Hb_001629_120 Hb_000023_130--Hb_001629_120 Hb_002073_150--Hb_011104_020 Hb_012389_010 Hb_012389_010 Hb_002073_150--Hb_012389_010 Hb_002073_150--Hb_001248_070 Hb_131876_010 Hb_131876_010 Hb_002073_150--Hb_131876_010 Hb_000483_430 Hb_000483_430 Hb_002073_150--Hb_000483_430 Hb_002073_150--Hb_069696_020 Hb_000140_460--Hb_069696_020 Hb_000140_460--Hb_002073_150 Hb_006970_030 Hb_006970_030 Hb_000140_460--Hb_006970_030 Hb_000618_110 Hb_000618_110 Hb_000140_460--Hb_000618_110 Hb_000984_160 Hb_000984_160 Hb_000140_460--Hb_000984_160 Hb_000140_460--Hb_018591_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0094411 0.670296 2.33598 1.48737 0.00945368 0.0172935
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0168778 0 0.302034 2.9287

CAGE analysis