Hb_001248_070

Information

Type -
Description -
Location Contig1248: 73792-76371
Sequence    

Annotation

kegg
ID rcu:RCOM_0174790
description amino acid transporter, putative
nr
ID XP_012093098.1
description PREDICTED: probable polyamine transporter At3g19553 [Jatropha curcas]
swissprot
ID Q9LH39
description Probable polyamine transporter At3g19553 OS=Arabidopsis thaliana GN=At3g19553 PE=3 SV=1
trembl
ID A0A067LIM2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16308 PE=4 SV=1
Gene Ontology
ID GO:0016020
description probable polyamine transporter at3g19553

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07516: 73813-76350 , PASA_asmbl_07517: 73813-76230
cDNA
(Sanger)
(ID:Location)		 004_L07.ab1: 75442-76251

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001248_070 0.0 - - PREDICTED: probable polyamine transporter At3g19553 [Jatropha curcas]
2 Hb_002073_150 0.050866893 transcription factor TF Family: MYB-related PREDICTED: transcription factor MYB1R1 [Jatropha curcas]
3 Hb_000608_290 0.0665609867 - - thioredoxin f-type, putative [Ricinus communis]
4 Hb_000705_040 0.0747784326 - - conserved hypothetical protein [Ricinus communis]
5 Hb_011104_020 0.0752906354 - - PREDICTED: ABC transporter B family member 2-like [Jatropha curcas]
6 Hb_069696_020 0.0781114179 - - PREDICTED: protochlorophyllide-dependent translocon component 52, chloroplastic-like isoform X2 [Jatropha curcas]
7 Hb_131876_010 0.0827267044 transcription factor TF Family: MYB PREDICTED: myb-related protein 308-like isoform X1 [Jatropha curcas]
8 Hb_001051_010 0.0844091719 - - PREDICTED: putative cyclic nucleotide-gated ion channel 15 [Jatropha curcas]
9 Hb_000140_460 0.0892502142 - - PREDICTED: uncharacterized protein LOC105628417 [Jatropha curcas]
10 Hb_000627_050 0.0895517483 - - PREDICTED: uncharacterized protein LOC105632845 [Jatropha curcas]
11 Hb_012389_010 0.0900177472 - - hypothetical protein POPTR_0018s11820g [Populus trichocarpa]
12 Hb_000483_430 0.0958729886 - - -
13 Hb_000968_010 0.0959285336 - - PREDICTED: glutamate receptor 3.7 isoform X1 [Jatropha curcas]
14 Hb_000373_010 0.0990931508 - - ATP binding protein, putative [Ricinus communis]
15 Hb_000984_160 0.0992607437 - - PREDICTED: amino acid permease 6-like isoform X1 [Jatropha curcas]
16 Hb_004994_030 0.099631194 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 [Jatropha curcas]
17 Hb_002407_090 0.1005963632 - - hypothetical protein JCGZ_00747 [Jatropha curcas]
18 Hb_018591_020 0.1017064635 - - Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplast precursor, putative [Ricinus communis]
19 Hb_000270_640 0.1020607387 - - hypothetical protein POPTR_0012s07880g [Populus trichocarpa]
20 Hb_000023_130 0.1031386408 - - Metal-nicotianamine transporter YSL1 [Glycine soja]

Gene co-expression network

sample Hb_001248_070 Hb_001248_070 Hb_002073_150 Hb_002073_150 Hb_001248_070--Hb_002073_150 Hb_000608_290 Hb_000608_290 Hb_001248_070--Hb_000608_290 Hb_000705_040 Hb_000705_040 Hb_001248_070--Hb_000705_040 Hb_011104_020 Hb_011104_020 Hb_001248_070--Hb_011104_020 Hb_069696_020 Hb_069696_020 Hb_001248_070--Hb_069696_020 Hb_131876_010 Hb_131876_010 Hb_001248_070--Hb_131876_010 Hb_002073_150--Hb_011104_020 Hb_012389_010 Hb_012389_010 Hb_002073_150--Hb_012389_010 Hb_002073_150--Hb_131876_010 Hb_000483_430 Hb_000483_430 Hb_002073_150--Hb_000483_430 Hb_002073_150--Hb_069696_020 Hb_001051_010 Hb_001051_010 Hb_000608_290--Hb_001051_010 Hb_018591_020 Hb_018591_020 Hb_000608_290--Hb_018591_020 Hb_002407_090 Hb_002407_090 Hb_000608_290--Hb_002407_090 Hb_000608_290--Hb_002073_150 Hb_000608_290--Hb_011104_020 Hb_000270_640 Hb_000270_640 Hb_000705_040--Hb_000270_640 Hb_002943_020 Hb_002943_020 Hb_000705_040--Hb_002943_020 Hb_000680_130 Hb_000680_130 Hb_000705_040--Hb_000680_130 Hb_000705_040--Hb_002073_150 Hb_029223_010 Hb_029223_010 Hb_000705_040--Hb_029223_010 Hb_011104_020--Hb_000483_430 Hb_001321_010 Hb_001321_010 Hb_011104_020--Hb_001321_010 Hb_000270_090 Hb_000270_090 Hb_011104_020--Hb_000270_090 Hb_004994_030 Hb_004994_030 Hb_011104_020--Hb_004994_030 Hb_011104_020--Hb_012389_010 Hb_069696_020--Hb_131876_010 Hb_000627_050 Hb_000627_050 Hb_069696_020--Hb_000627_050 Hb_000984_160 Hb_000984_160 Hb_069696_020--Hb_000984_160 Hb_000140_460 Hb_000140_460 Hb_069696_020--Hb_000140_460 Hb_030827_010 Hb_030827_010 Hb_069696_020--Hb_030827_010 Hb_131876_010--Hb_012389_010 Hb_131876_010--Hb_000984_160 Hb_000041_210 Hb_000041_210 Hb_131876_010--Hb_000041_210 Hb_131876_010--Hb_000627_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 5.82035 19.0475 13.2695 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.299197 0.181089 0 3.71816 30.9064

CAGE analysis