Hb_000705_040

Information

Type -
Description -
Location Contig705: 30452-32989
Sequence    

Annotation

kegg
ID rcu:RCOM_0731750
description hypothetical protein
nr
ID XP_002520470.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S3A1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0731750 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55060: 30499-31458
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000705_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000270_640 0.0736966471 - - hypothetical protein POPTR_0012s07880g [Populus trichocarpa]
3 Hb_002943_020 0.0743486252 - - hypothetical protein POPTR_0075s00240g, partial [Populus trichocarpa]
4 Hb_001248_070 0.0747784326 - - PREDICTED: probable polyamine transporter At3g19553 [Jatropha curcas]
5 Hb_000680_130 0.0792321414 - - beta-galactosidase, putative [Ricinus communis]
6 Hb_002073_150 0.0836759705 transcription factor TF Family: MYB-related PREDICTED: transcription factor MYB1R1 [Jatropha curcas]
7 Hb_029223_010 0.0879831155 - - PREDICTED: ACT domain-containing protein ACR10 [Jatropha curcas]
8 Hb_002636_070 0.0893520149 - - PREDICTED: putative U-box domain-containing protein 42 [Jatropha curcas]
9 Hb_000373_010 0.0911927749 - - ATP binding protein, putative [Ricinus communis]
10 Hb_069696_020 0.0980177094 - - PREDICTED: protochlorophyllide-dependent translocon component 52, chloroplastic-like isoform X2 [Jatropha curcas]
11 Hb_000968_010 0.0980686836 - - PREDICTED: glutamate receptor 3.7 isoform X1 [Jatropha curcas]
12 Hb_011104_020 0.1026371101 - - PREDICTED: ABC transporter B family member 2-like [Jatropha curcas]
13 Hb_003195_080 0.1037677565 - - PREDICTED: cytochrome P450 87A3-like [Jatropha curcas]
14 Hb_131876_010 0.1048495881 transcription factor TF Family: MYB PREDICTED: myb-related protein 308-like isoform X1 [Jatropha curcas]
15 Hb_000608_290 0.1053946614 - - thioredoxin f-type, putative [Ricinus communis]
16 Hb_004979_070 0.1060718787 - - wall-associated receptor kinase galacturonan-binding protein [Medicago truncatula]
17 Hb_004946_010 0.10678829 - - hypothetical protein POPTR_0013s035502g, partial [Populus trichocarpa]
18 Hb_001541_280 0.1086634301 - - phosphate transporter [Manihot esculenta]
19 Hb_000675_010 0.109662091 - - PREDICTED: cytokinin dehydrogenase 7 [Jatropha curcas]
20 Hb_030827_010 0.1108951118 transcription factor TF Family: HB Homeobox-leucine zipper ROC6 [Gossypium arboreum]

Gene co-expression network

sample Hb_000705_040 Hb_000705_040 Hb_000270_640 Hb_000270_640 Hb_000705_040--Hb_000270_640 Hb_002943_020 Hb_002943_020 Hb_000705_040--Hb_002943_020 Hb_001248_070 Hb_001248_070 Hb_000705_040--Hb_001248_070 Hb_000680_130 Hb_000680_130 Hb_000705_040--Hb_000680_130 Hb_002073_150 Hb_002073_150 Hb_000705_040--Hb_002073_150 Hb_029223_010 Hb_029223_010 Hb_000705_040--Hb_029223_010 Hb_001541_280 Hb_001541_280 Hb_000270_640--Hb_001541_280 Hb_000968_010 Hb_000968_010 Hb_000270_640--Hb_000968_010 Hb_000373_010 Hb_000373_010 Hb_000270_640--Hb_000373_010 Hb_002636_070 Hb_002636_070 Hb_000270_640--Hb_002636_070 Hb_004979_070 Hb_004979_070 Hb_000270_640--Hb_004979_070 Hb_000675_010 Hb_000675_010 Hb_002943_020--Hb_000675_010 Hb_002943_020--Hb_000270_640 Hb_002943_020--Hb_004979_070 Hb_002943_020--Hb_002073_150 Hb_007904_110 Hb_007904_110 Hb_002943_020--Hb_007904_110 Hb_001248_070--Hb_002073_150 Hb_000608_290 Hb_000608_290 Hb_001248_070--Hb_000608_290 Hb_011104_020 Hb_011104_020 Hb_001248_070--Hb_011104_020 Hb_069696_020 Hb_069696_020 Hb_001248_070--Hb_069696_020 Hb_131876_010 Hb_131876_010 Hb_001248_070--Hb_131876_010 Hb_000680_130--Hb_000373_010 Hb_002155_020 Hb_002155_020 Hb_000680_130--Hb_002155_020 Hb_000680_130--Hb_002636_070 Hb_032695_010 Hb_032695_010 Hb_000680_130--Hb_032695_010 Hb_001579_060 Hb_001579_060 Hb_000680_130--Hb_001579_060 Hb_002073_150--Hb_011104_020 Hb_012389_010 Hb_012389_010 Hb_002073_150--Hb_012389_010 Hb_002073_150--Hb_131876_010 Hb_000483_430 Hb_000483_430 Hb_002073_150--Hb_000483_430 Hb_002073_150--Hb_069696_020 Hb_016924_010 Hb_016924_010 Hb_029223_010--Hb_016924_010 Hb_029223_010--Hb_002636_070 Hb_003142_080 Hb_003142_080 Hb_029223_010--Hb_003142_080 Hb_029223_010--Hb_000270_640 Hb_000836_030 Hb_000836_030 Hb_029223_010--Hb_000836_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0283374 2.56479 5.99332 5.15519 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0519044 0.0408219 0 2.08586 13.7602

CAGE analysis